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Hi Ben,
I am big fan of DADA2 for analysing 16S data. I recently worked with AmpliSeq data generated on Illumina with paired-end. In nutshell, multiple targets (AMR genes) (>800) were amplified and…
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### Description of the bug
Hi there,
I am using `nf-core/differentialabundance` v.1.5.0.
It seems that in the "Exploratory analysis" section of the "Results" part, Raw values and Normalized va…
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Hi @picciama
I'm using Oktoberfest to generate a prosit library using a semi tryptic library of uniprot proteome. Here is the output including the error.
2024-02-06 08:43:03,224 - INFO - oktobe…
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Hello,
I polished my assembly using arrow and I have a .gff file, but no .vcf.
Is it possible to run Merfin using a .gff file ?
Otherwise do you know a way to cenvert .ggf to .vcf ?
Thanks
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[21 seconds]: STEP10 -> 10.mapsamples.pl
Creating Bowtie reference: python3 /appli/conda-env/bioinfo/squeezemeta-1.6.2/SqueezeMeta/bin/bowtie2/bowtie2-build --quiet /home3/datawork/apurielh/MetagenOI…
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Various builds are known to work on SL5, but not on SL6. This issue is intended to group those together, to keep track of what needs to be fixed.
- [ ] cairo: #639 (+ NCL/6.0.0 because of dep)
- [x] F…
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I have a 25 GB BAM file with about 400 million PE reads coming from the [zUMIs](https://github.com/sdparekh/zUMIs) pipeline. Single-cell SMART-Seq3 RNA-Seq reads with UMIs. I am running QoRTs QC on th…
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Hi,
I am trying to run schmutzi.pl after contDeam.pl and contDeam works however I keep getting errors from schmutzi.
contDeam.pl --library double --out outputdir/sample.bam refs/human_MT.fa bam…
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## Short description of the problem
Hello Anvio team!
I am trying to use anvio for automated bin refinement (which is generated outside anvio). I created contig db for each bin and profile db (u…
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## 概要
scRNA-seq本 第4章をやる
## Todo
- [x] Seuratによる解析準備
- [x] Seuratによるデータ前処理の手順
- [x] Seuratによるデータ解析の手順
dogTK updated
4 months ago