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Not sure if I am doing anything wrong, but it works that way with the CWL tool description reference implementation. Any advice would be appreciated.
Here is the workflow and a YAML job description…
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## Feature Request
### Desired behaviour
The following leads to an unhelpful NullPointerException
```
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
id: "Consensu…
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## Describe the bug
A clear and concise description.
## Details
*Please verify and redact the details.*
**Renku version:** 0.3.4.dev30
**OS:** Linux (48~16.04.1-Ubuntu SMP Tue Jan 29 18:03:48…
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Hi @chapmanb and @roryk
Similar to https://github.com/bcbio/bcbio-nextgen/issues/2697, I'm trying to run VC on an SGE cluster, this time using IPython parallel instead of CWL and Cromwell.
I'm …
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Hi Brad,
We're starting to feel some storage constraints through our usage of bcbio. We'd like to be able to reannotate the resulting vcf files using the bcbio framework, but without having to keep…
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I'm trying to update a previously working 2018-11-07.build3190 stand-alone install to the current 2019-02-11.buiild3477 on Linux Mint 18 (based on Ubuntu 16.04 LTS). Following the instructions in the…
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Hi,
These are some rather minor nuisances but I figured they could be worth reporting, just in case they could be "symptoms" of something more serious.
Here is an archive with (hopefully) every…
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I don't know how much Chromium for desktop and Chromium for Android share code, but it would be cool to have an ungoogled Android version.
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Hello,
I'm trying to run a CWL variant calling analysis on an SGE cluster with Cromwell and a local bcbio install and I get the following error:
```
Traceback (most recent call last):
File "…
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Dear,
I am trying to fetch ecs mixed instance policy
1) ECS Mixed Instance Policy:
This is somewhat i feel is important
Outputs:
instanceProfile:
Description: Instance profile ARN
…