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Hi, I have installed the program mixcr however when I run the command "mixcr" I get the output of "No jar." Is there anything I am doing wrong?
Thanks.
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Here:
https://github.com/milaboratory/mixcr/blob/develop/src/main/java/com/milaboratory/mixcr/cli/ActionExportCloneReads.java#L149
Something like this:
https://github.com/milaboratory/mixcr/blob/deve…
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```
Exception in thread "main" java.lang.IllegalArgumentException
at com.milaboratory.mixcr.reference.GeneFeature.intersection0(GeneFeature.java:422)
at com.milaboratory.mixcr.reference.GeneFeature.in…
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```
fabio@ahmad-desktop:~$ mixcr importFromIMGT
Starting importFromIMGT.sh script
/home/fabio/.linuxbrew/Cellar/mixcr/1.8.1-1/mixcr
MiXCR v1.8.1 (built Wed Jun 29 10:35:12 CEST 2016; rev=d7c1254; bran…
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Hey,
running mixcr importFromIMGT starts the script. I get to agree to the IMGT terms. Then it will ask me to select a species. However, it shows me an error before giving me the species options that…
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Exception in thread "main" java.lang.NullPointerException
at com.milaboratory.mixcr.cli.ActionExportCloneReads.writeSingle(ActionExportCloneReads.java:133)
at com.milaboratory.mixcr.cli.ActionExpo…
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I understand the mapping between initial reads and final clonotypes. But I want to know the mapping between **Aligned sequence** and clones.
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Hello,
We are aligning TCRA/B data using MiXCR. These data are from single cells, and we expect a single TCRA and single TCRB. I am trying to automate the filtering of data form MiXCR. I was wonde…
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Hello,
I think there might be pup error in these message, but how could I fix it?
$ mixcr importFromIMGT
Starting importFromIMGT.sh script
By using this script you agree to the terms of use of IMGT w…
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I got this result from one of my analysis.
cmd option
`
mixcr exportClones -vHit -jHit -dHit -count -aaFeature CDR3
`
in mixcr version 1.6
```
IGHV4-59*00 IGHJ4*00 IGHD6-19*00 87 CAGGSGLPYW
IG…