-
There are 957 Cov species in the NCBI taxonomy tree.
There are 4,236 complete genomes of Coronaviridae species in Genbank, which is ~4 complete genomes per species. List here:
[complete_cov_geno…
-
For best taxonomy assignment and tree-building, we would ideally identify these "domains" per #195:
pp1ab: ADRP, nsp5 (3CLpro), nsp12 (RdRp), nsp13 (Hel), nsp14 (ExoN), nsp15 (NendoU) and nsp16 (O-…
-
Hi,
I am trying to make a custom Kraken2 database with bacteria, archaea, fungi, viruses and some "added" genomes. It seems to work until I do the classification where I got only 25% of my reads c…
-
We will need to provide a mechanism by which users can automatically obtain the reference genomes and databases that are specific to this pipeline. It is likely that we will need the host reference …
-
Master tsv file for fist 1k assembler targets here:
[https://serratus-public.s3.amazonaws.com/rce/assembly/assembly_targets_first_1k.tsv](https://serratus-public.s3.amazonaws.com/rce/assembly/assem…
-
First of all, let me thank you for making this deck. I had something similar in mind, but alas, I was too busy.
I've found a couple of things that I think could be improved but don't want to open a…
-
**What is this request referring to?**
#487
Parent | labels | Synonyms | about
-- | -- | -- | --
SO:0000186 | LTR/Copia | RLC, Ty1, Copia, LTR-Copia | LTR retrotransposon in the Copia superfami…
-
-
Hi, there:
Deeply appreciate again that you guys have developed a tremendously useful and powerful tool!
I now got a few Philosophical and Scientific questions. Hope some of you can kindly she…
-
How many novel Cornoavirus species in nature remain to be discovered? This is a fundamental biological question that we are uniquely positioned to answer. Estimating the number of things that nobody h…