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In an email discussion we came to the conclusion that it made sense to have multiple inheritance in Julia with one fairly simple restriction:
> If two abstract types are are used for dispatch in the …
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Reported on gitter.im
denovo
```
locus_3925 142 . G A,T 13 PASS NS=4;DP=33 GT:DP:CATG 0/2:9:1,1,3,4 0/1:7:7,0,0,0 0/2:9:0,1,3,5 ./.:0:0,0,0,0 ./.:0:0,0,0,0 ./.:0:0,0,0,0 ./.:0:0,0,0,0 ./.:0:0,0,0…
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Some schema notes I took while testing the `va` API:
(1) Numeric type mismatch means graphql cannot map `value` fields to the same query field.
- SequenceLocation.start is a
- DefiniteRange
…
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How can I get more mutations in the clonal architecture portion of the clonograph? The default is set to 3 but I'd like to increase it.
Also I get this issue with the trajectory analysis...
sce_su…
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I recently attempted to import genomic data to test SIMplyBee pipeline and encountered some issues. To investigate further, I wrote a reproducible R script (attached). AlphasimR > SIMplyBee R package…
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* **What is the current behavior?**
I've got that issue at some positions:
_Discarded genotype at this position because REF in VCF (A) does not match expected reference (AT)_
My input vcf file …
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I installed VEP using the github installation, prior to running perl INSTALL.pl I installed the necessary packages Archive::Zip, DBD::mysql and DBI using cpanm. Unfortunately, the installation ended w…
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Expected behavior:
With previous test files (small, 800-line sliced fastq), behaves as expected and FilterMutectCalls completes successfully. With large fastq files or full-size files, FilterMutectCa…
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Hi ~
I'm using Battenberg on my tumor WGS data and have encountered some issues with certain samples. For example, in the **sample.BattenbergProfile_average.png (A)** and **sample_copynumberprofile.p…