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Dear developers,
after an upgrade to 1.1.5a (the genome issue). When running a pipeline (working in 1.1.1), I got following error:
[2019-04-06T17:32Z] multiprocessing: organize_samples
[2019-04…
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command (just the usual):
```
cwlexec -p --workdir /home/user//output/ TranscriptsAnnotation-i5only-wf.cwl TranscriptsAnnotation-i5only-wf.test.job.yaml
```
cwlexec fails at the scattered function…
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**Describe the bug**
The documentation in response to the 'help' argument needs to be improved.
The output of "captk help" should be revised to be more user-friendly:
1. begin with a short ov…
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hi!
In our specific use case we want to be able to perform read/write operations on input files and directories. Our field is radio astronomy, and we often operate on TeraByte sized datasets. Curre…
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Dear developers,
sorry for rising this again, this issue is related to issue #2755. I have checked that the last version as described in the response to this issue (patched utils.py) are indeed pre…
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Some points to discuss here:
How similar/different to object methods?
Distinguished endpoints for each or different?
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Occasionally my application encounters an exception which gets logged in the LibraryLog, attached here is an example. When this happens, logs stop getting ingested for some time, usually hours, until …
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@chakrabandla I have run validator http://142.1.177.188:8080/trs/validator/debug?url=http://api.biocontainers.pro/api/ga4gh/v2/ and it gives me some errors that we need to fix in our api.
```json …
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Hello,
As recommended in https://github.com/bcbio/bcbio-nextgen/issues/2689#issuecomment-465955157, I tried using GATK4 with CWL (Cromwell) for calling variants, using the population calling method…
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A common request is to extend the standard library (https://github.com/openwdl/wdl/issues/296, https://github.com/openwdl/wdl/issues/276, https://github.com/openwdl/wdl/issues/234, https://github.com/…