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OSX 10.10.5 and OSX 10.11.3 give the same error ...
sh ./importFromIMGT.sh
By using this script you agree to the terms of use of IMGT website. (see http://www.imgt.org/ for details).
-n Press ENTER t…
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Hello,
I am running mixcr 1.7.1 using the command below. I downloaded the human library locally using importFromIMGT.sh. I get this NPE for multiple species downloaded locally:
mixcr align -f -r C…
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Hello,
Just wondering where the jar file is that you suggest using on windows? I have cloned the repository but see no jar file. I am running on FreeBSD. I've tried to modify your mixcr script, but i…
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All entries in `exportClones` have empty V-alignment strings (i.e. best V alignment string is empty, and top 5 V alignment string is `;;;;`) when using an IMGT reference (`align` with the human IMGT I…
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```
$ mixcr align -f --library local -r log_align.txt -l TRA -s mm "../../local/mol_med/tcr_cd3/150909 TC/150909-MID1_S1_L001_R1_001.fastq" mid1.vdjca
Exception in thread "main" java.io.FileNotFoundEx…
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From within the mixcr installation directory, I ran importFromIMGT.sh and asked for "Mus Musculus" data, with names "mm:musmusculus".
When I try to run the alignment using -s mm, it crashes as below.…
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My understanding is that clonal sequences which are very similar will be clustered together after alignment, and a "consensus" sequence will be used. So the "clone count" refers to all occurrences of …
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$ mixcr importFromIMGT
Starting importFromIMGT.sh script
By using this script you agree to the terms of use of IMGT website. (see http://www.imgt.org/ for details).
Press ENTER to continue or other ke…
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I find '*', '~', '-' in CDR3, what does each of them means? Thanks.
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- add options `--filter-out-of-frames` and `--filter-stops` to `export`
- rename `-presetFile` with `preset-file` in `export`
- rename `-listFields` with `list-fields` in `export`
- add description fo…