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Hi.
I converted my bam files to sam. Then I used sam2bed.
I used the command profile bins for my peak files and read files; both were in bed format.
The tool could read the peak files but could…
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Hi all,
I've been trying to use the neurodsp signal simulation functions to try to understand how aperiodic parameters affect some other spectrum measures from our in vivo experiments (changes in…
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Create a workflow for peak calling VISION ChIP-seq datasets that (as closely as possible) matches the ENCODE best practices pipelines. ENCODE pipelines are [here](https://github.com/ENCODE-DCC/chip-se…
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If I run `computeDeviations` on a chromVARCounts object without providing annotations, then I expect the deviations thus computed are the chromatin accessibilities of the input peaks. But is it safe t…
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The goal is to migrate the code:
https://github.com/cheminfo-js/spectra/blob/master/packages/nmr-simulation/src/simulate1D.js
To use the package: `spectrum-generator`.
This means that you sim…
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### Describe you issue
I run the enrichPeakOverlap using two peak files two time with the same parameters and just exchange them (one for queryPeak and the other for targetPeak and swap them in the s…
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Thinking back to when @jameysharp wrote/demonstrated the code, it appears that the Kalman filter filters out the wrong data variance. We noticed that the line largely remains flat, with peaks that (m…
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I'm on KDE Plasma on Wayland session
Terminal emulator - Alacritty
When I run htop it's usually shows around 15% CPU with peaks up to 25%
Is it ok? For example on the screenshot at the same tim…
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### Prerequisites
+ [x] Have you read [Feedback](https://guangchuangyu.github.io/chipseeker/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)?
* [x] ma…
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I would like to report an issue (which is now resolved for me) related to parallelization.
It happened when trying to perform motion correction by spikeinterface built-in motion correction functions.…