YuLab-SMU ChIPseeker issues

YuLab-SMU / ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585

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issues

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Mismatch between rownames of tagMatrix and windows indexes

#236 lufce opened 1 month ago
0
Most distances in the flank_gene_distances column are 0

#235 rejo27 opened 3 months ago
0
ctg开头的染色体号和geneChr不一样

#234 Sherry520 opened 4 months ago
0
error with Ensembl-based annotation

#233 yfan18 opened 4 months ago
0
Would be good to add an error message if the peakfile is not bed file

#232 pocession opened 4 months ago
0
Feature request: flexible distance ranges in plotDistToTSS()

#231 perinom opened 5 months ago
0
A. thaliana annotation mistakes

#230 BHB26 opened 6 months ago
0
annotatePeak using multiple cores?

#229 kelly-sovacool opened 6 months ago
0
peakHeatmap split.default error

#228 thugib opened 6 months ago
0
update CITATION and separate plot-testing code

#227 Clearmind777 closed 6 months ago
0
shorten compile time

#226 MingLi-929 opened 6 months ago
0
invalid DB file

#225 hanguojun007 opened 7 months ago
0
When using enrichPeakOverlap, why the p values of different target peaks are same?

#224 Dragonlongzhilin opened 7 months ago
0
genomicAnnotationPriority ChIPseeker v1.36.0

#223 HAOXUANmogu opened 9 months ago
6
small bug fix

#222 bug1303 closed 11 months ago
1
A bug or a problem when using ChIPseeker to do genomic annotation ?

#221 DengEr-1993 opened 1 year ago
0
How can I get the digital percentages of the gene components of `plotAnnoBar`?

#220 danli349 opened 1 year ago
0
Revert "remove dependency of BiocStyle"

#219 GuangchuangYu closed 1 year ago
0
remove dependency of BiocStyle

#218 MingLi-929 closed 1 year ago
0
Can it be as highly customizable as "computeMatrix" in deeptools? for example if I want to plot the distribution of genes on the TAD boundary?

#217 kuangzhuoran opened 1 year ago
0
update vignettes

#216 MingLi-929 closed 1 year ago
0
covplot

#215 ybaeus opened 1 year ago
0
Critical errors in annotating introns and exons - wrong gene

#214 tjparnell opened 1 year ago
0
Error in split.default(1:length(windows), as.factor(seqnames(windows))) : group length is 0 but data length > 0 In addition: Warning message: In .merge_two_Seqinfo_objects(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)

#213 xuyiwennn opened 1 year ago
0
inconsistency with annotatePeak

#212 fanying2015 opened 1 year ago
2
Question regard annotatepeaks

#211 Lattesnow opened 1 year ago
0
Wrong annotation (distal intergenic instead of downstream) with annotatePeak

#210 beryljones opened 1 year ago
0
peakHeatmap returns ` Error: external pointer is not valid` in Rmarkdown

#209 h4rvey-g closed 1 year ago
1
covplot

#208 fork16 opened 1 year ago
0
feature request #202

#207 MingLi-929 closed 1 year ago
1
bug fix #201

#206 MingLi-929 closed 1 year ago
0
bug fix #193

#205 MingLi-929 closed 1 year ago
0
bug fix issue #200

#204 MingLi-929 closed 1 year ago
1
change the method of plotting heatmap

#203 MingLi-929 closed 1 year ago
6
Feature request

#202 MingLi-929 closed 1 year ago
0
col parameter in plotAnnopie

#201 MingLi-929 closed 1 year ago
2
Can getAnnoStat be exported?

#200 snikumbh closed 1 year ago
0
change the method of plotting heatmap

#199 MingLi-929 closed 1 year ago
18
TagMatrixList

#198 michela12345 opened 1 year ago
1
update document

#197 MingLi-929 closed 1 year ago
0
Use ggplot methods to plot venn

#196 MingLi-929 closed 1 year ago
0
Feature Request: upset plots for peak overlaps

#195 apelonero-GladstoneInstitutes opened 1 year ago
0
bug fix #191

#194 MingLi-929 closed 2 years ago
0
support EnsDb

#193 GuangchuangYu closed 1 year ago
1
Feature requests about plotPeakProf2 again...

#192 yuanlizhanshi opened 2 years ago
3
getTagMatrix.binning.internal

#191 farmohh closed 2 years ago
7
add new function and fix bugs

#190 MingLi-929 closed 2 years ago
5
Feature requests about plotPeakProf2

#189 yuanlizhanshi opened 2 years ago
3
add function for covplot()

#188 MingLi-929 closed 2 years ago
0
enrichAnnoOverlap

#187 scli1981 opened 2 years ago
0