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YuLab-SMU
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ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
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Feature requests about plotPeakProf2
#189
yuanlizhanshi
opened
2 years ago
3
add function for covplot()
#188
MingLi-929
closed
2 years ago
0
enrichAnnoOverlap
#187
scli1981
opened
2 years ago
0
readPeakFile reads in peak coordinates from MACS xls files as zero-based although they are 1-based
#186
frankRuehle
opened
2 years ago
1
covplot multiple color problem
#185
EmanuelSoda
closed
2 years ago
1
chipseeker upsetplot
#184
yangskyfucker
opened
2 years ago
0
could be possible that multiple peak input plotAvgProf2 function
#183
yuanlizhanshi
closed
2 years ago
0
plot from plotPeakProf2 exon end as central wrongly shows "TSS" not "exon end"
#182
HUNNNGRY
closed
2 years ago
7
call geom_blank() when there is no peak.
#181
RestlessTail
closed
2 years ago
1
Too small values for Peak Count Frequency
#180
amizeranschi
opened
2 years ago
0
correct typo in README.Rmd
#179
MingLi-929
closed
2 years ago
0
update news.md
#178
MingLi-929
closed
2 years ago
0
could not find function plotPeakProf() and plotPeakProf2()
#177
cgommarGTX
opened
2 years ago
1
Feature request: Plot the chromosome lengths in covplot()
#176
amizeranschi
opened
2 years ago
0
tagMatrix upstream and downstream should be actual number error
#175
tiagochst
opened
2 years ago
1
getTagMatrix with Granges without type attribute gives an error
#174
tiagochst
opened
2 years ago
1
support more kinds of bed files
#173
MingLi-929
closed
2 years ago
0
debug for swaping the upstream and downstream in the negative strand
#172
MingLi-929
closed
2 years ago
0
plotAvgProf2 failed
#171
songeric1107
opened
2 years ago
1
broadPeak files not read properly (due to a tiny bug)
#170
sam-israel
closed
2 years ago
0
update vignettes
#169
MingLi-929
closed
2 years ago
0
Updates vignettes
#168
MingLi-929
closed
2 years ago
1
Take strand information into account
#167
MingLi-929
closed
2 years ago
12
Incorrect Downstream annotation bug in annotatePeak
#166
ikumar2000
opened
2 years ago
1
Applying ChIPseeker to single base resolution sequencing
#165
DrDaedalusWHU
opened
2 years ago
2
add function of combine_csAnno
#164
MingLi-929
closed
2 years ago
0
update vignettes
#163
MingLi-929
closed
2 years ago
0
Combine functions
#162
MingLi-929
closed
2 years ago
8
solve warnings from check()
#161
MingLi-929
closed
2 years ago
0
Add function of getting TTS region
#160
MingLi-929
closed
2 years ago
4
Covplot font size
#159
cboschi
opened
2 years ago
1
Problems with ChIPseeker annotation in mm10
#158
iramai
opened
2 years ago
0
How to combine csAnno object ?
#157
yuanlizhanshi
opened
3 years ago
1
Adding function of plotting bioregion by binning
#156
MingLi-929
closed
2 years ago
8
Add function of ploting gene body (update)
#155
MingLi-929
closed
3 years ago
2
Add function of ploting gene body
#154
MingLi-929
closed
3 years ago
1
Problems with ChIPseeker annotation
#153
iramai
closed
3 years ago
3
heatmap with gradient color
#152
MingLi-929
closed
3 years ago
1
Change color scheme
#151
MingLi-929
closed
3 years ago
1
Unable to find an inherited method for function 'NSBS' for signature '"SortedByQueryHits"'
#150
rbenel
opened
3 years ago
4
plotDistToTSS: error when trying to plot multiple objects
#149
massimofagg
closed
2 years ago
1
bug fix #112 #121 #139
#148
MingLi-929
closed
3 years ago
0
Make ncpus configurable for getTagCiMatrix
#147
thesus
closed
3 years ago
1
fix issue #94
#146
MingLi-929
closed
3 years ago
0
RAM usage question for getTagMatrix and plotAvgProf using GFF txdb
#145
MrKevinDC
closed
2 years ago
1
bug fixed issue#134 and add function
#144
MingLi-929
closed
3 years ago
0
covplot for GRangesList not working as intended
#143
MrKevinDC
closed
3 years ago
1
annotatePeak issue with genomicAnnotationPriority order
#142
Liufan-YIN
closed
3 years ago
2
Update utilities.R to fix a bug
#141
MingLi-929
closed
3 years ago
0
TagHeatmap Color
#140
mangchen922
opened
3 years ago
0
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