-
Hi,
I am attempting to follow the vignette using my data. I have previously, successfully run it on a smaller data set from a Shimadzu Scientific Instrument but using `MatchedFilter` instead of `Cen…
-
## The problem
I'm having trouble with using `parsnip` for one-class SVMs with `kernlab` engine using `type="one-svc"` option.
First, it seems like I cannot get the fitted model to produce any pr…
-
**Context and question**
Hello everyone,
for a few days, when I run the BIOMOD_Modeling() function, the following error appears: in some models:
Error in x$formula : oggetto di tipo 'closure' n…
-
An error is encountered in the provided code when the changeDataId function is used to map gene data from "symbol" to "pathwayCommons". However, mapping from "symbol" to "entrez" and then to "pathwa…
-
Hi,
I want to change the target of a survival task which has two target variables, namely `time` and `status`. Doing the following fails (haven't put a `trafo` function but it's irrelevant):
``` r…
-
**Describe the bug**
While working on https://github.com/luukvdmeer/sfnetworks/discussions/211 I noticed that `to_spatial_subdivision` morpher behaves weirdly when there are identical internal points…
-
Hi,
We had some feedback from an error obtained while running the CAMERA.annotate Galaxy module.
The data seems ok, previous fillChromPeak step ran smoothly, and even CAMERA.annotate can be run wit…
-
**Describe the bug**
When running in pre-computed mode, the method errors, but works with a numeric matrix.
**To Reproduce**
Run phate function with parameter: `knn.dist.method = "precomputed"`
…
-
Hi,
I'm getting an error from plotMB that says:
```r
plotMB(results = motifbreakr.results, rsid="chr1:59641318-59641317::T", effect = "strong")
Error in grid.Call.graphics(C_unsetviewport, as…
-
I am frequently running into this problem where I want to add the gene names, gene biotypes and other features to the differentially accessible peaks in a single-cell ATAC-seq data analysis of two exp…