Simon-Coetzee motifBreakR issues

Simon-Coetzee / motifBreakR

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.

27 stars 12 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

copyedits to vignette and README

#55 dennishazelett closed 2 months ago
0
Error in serialize(data, node$con) : error writing to connection Error in unserialize(node$con) : error reading from connection

#54 yalongan opened 8 months ago
1
plotMB error :

#53 bioarpit1 closed 3 months ago
10
Adding chr to chromosome names should be an option

#52 stephenturner opened 1 year ago
0
Error in run motifbreakR

#51 tzhu-bio closed 3 months ago
1
unexpected pctAlt

#50 lotard closed 3 months ago
8
Odd Motif Positions

#49 lotard opened 1 year ago
4
Where is version 2.12.0?

#48 molecules closed 3 months ago
0
Error loading in VCF file

#47 maggiebr0wn opened 1 year ago
1
plotMB error: Error in if (doRev) { : the condition has length > 1

#46 jing-wan closed 3 months ago
4
motifbreakR error SNPs from BED formatted file

#45 sotudian opened 1 year ago
3
motifbreakR() never returns a result

#44 5Aki1 closed 3 months ago
3
motifbreakR error when set show.neutral = TRUE

#43 hdm2020 closed 3 months ago
3
Any plans to include a p value for the affinity score change between the two alleles?

#42 NCTrailRunner opened 2 years ago
0
motifbreakR error SNPs from BED formatted file

#41 Seleit opened 2 years ago
2
motifbreakR with custom motifs

#40 magnitov closed 2 years ago
3
SNP at RNA level

#39 BenxiaHu closed 2 years ago
1
Error in running motifBreakR

#38 amootta opened 2 years ago
1
Cannot load vcf file

#37 Zepeng-Mu closed 2 years ago
1
How large indels can motifbreakr process?

#36 Minglc opened 2 years ago
1
parallel execution of calculatePvalue?

#35 paul-shannon closed 2 years ago
5
logical subscript contains NAs

#34 Addamoo closed 2 years ago
2
multiple cores do not seem to be used

#33 paul-shannon closed 2 years ago
3
update shiny version with master updates

#32 Simon-Coetzee closed 3 years ago
0
plotMB: Error in grid.Call.graphics(C_unsetviewport, as.integer(n))

#31 ellchua opened 3 years ago
2
SNPs recognized as indels?

#30 Magda-M opened 3 years ago
0
No motifbreakR Results for chek2 Analysis

#29 DarioS opened 4 years ago
1
Software Redefines What an Indel is

#28 DarioS closed 4 years ago
1
Analysis Error Using chek2 Example Data

#27 DarioS opened 4 years ago
1
VCF Import Fails With Unclear Error

#26 DarioS opened 4 years ago
0
GRanges Not Great for Variant Storage

#25 DarioS opened 4 years ago
0
Variants From File Documentation Missing

#24 DarioS opened 4 years ago
0
motifbreakR error

#23 BenxiaHu opened 4 years ago
2
GitHub installation error

#22 bschilder closed 4 years ago
2
plotMB error

#21 bschilder opened 4 years ago
0
Devel vcf indel

#20 Simon-Coetzee closed 4 years ago
0
object 'snp.sequence.alt.indel' not found

#19 yfu1116 opened 4 years ago
0
How to interpret the strand column in results?

#18 yfu1116 closed 3 years ago
0
Is it possible to use custom motif database ?

#17 gouthamatla closed 4 years ago
1
plotMB not working on OSX

#16 firatuyulur closed 4 years ago
0
snps.from.rsid error to load XtraSNPlocs.Hsapiens.dbSNP144.GRCh37

#15 xinyixinyijiang opened 5 years ago
2
Only show "?" when using plotMB

#14 danliangunc closed 3 months ago
1
Find Broken Motifs for a combination of SNPs

#13 YichaoOU closed 3 months ago
2
snps.from.file error to load bed file.

#12 lwtan90 closed 3 months ago
3
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function

#11 Jasonmbg opened 6 years ago
0
Too many stacks to draw of plotMB?

#10 xflicsu closed 3 months ago
6
caught segfault when using plotMB

#9 YiweiNiu closed 3 months ago
0
Loading VCF using snps.from.file()

#8 ATpoint closed 3 months ago
1
Error, whilst attempting to use plotMB

#7 Dazcam closed 3 months ago
2
Strand information

#6 xtmgah closed 3 months ago
4