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At the 5/16 meeting, we spoke about ways to re-organize Druggable Gene Categories for v5. I've done a preliminary analysis, mostly for my own benefit, but hopefully this spurs on ideas about how we co…
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Hi,
I recently tried eggnog-mapper website to annotate my bacterial genome for COG analysis. From the resulting output I was using the column of COG_categories to calculate the number of genes annota…
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The reason why I'm asking is because VirFinder, geNomad, VirSorter(2), etc. operate on individual contigs then those results are usually fed into CheckV to determine how complete/contaminated the viru…
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Under "Visualization using a Genome Browser (IGV)", step 2 does not work, at least on usegalaxy.org:
https://github.com/galaxyproject/training-material/blame/master/topics/sequence-analysis/tutorials…
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Same problem as the issue #8
I ran /save/smrtanalysis/current/analysis/bin/ipdSummary.py --verbose --methylFraction --identifyMinCov 10 --minCoverage 10 --outfile epigenet --mapQvThreshold 30 --numW…
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It looks like some updates have broken how estimate_purity would obtain the MAF data for a sample. This should be fixed so we can use the augment_ssm output with the auto-removal of variants with low …
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Hi @anglixue,
I have been trying to run mtCOJO on a trait (GWAS summary available here: ) while adjusting for another trait (GWAS summary available here: filename: GSCAN_CigDay_2022_GWAS_SUMMARY_S…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Hi
I am using docker image for analysis. But Makefile is not running in one go, it is stopping after first step.
rsat_user@cde778d90cbd:~/rsat_results$ make -f peak-motifs.mk
Creating the result…
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I created RSEM index based on the eastern oyster genome gtf file where I only considered transcripts based on the GNOMON source (this only appears to