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## Check Documentation
I have checked the following places for your error:
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core/sarek pipeline doc…
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hi all, I've performed a local install of sunbeam on our cluster and received this as output from `bash tests/run_tests.bash -d /home/bbrow6/tmp/`
Running setup... ✔
Running build_test_data... ✔
…
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Hello Xihao,
If we just want to analyze some selected candidate regions in the genome (e.g., 100 genes or one chromosome), should we use the rank relative to the whole genome or the rank among the …
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From R-hub checks:
```sh
About to run xvfb-run R CMD check aroma.core_3.3.0.tar.gz
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement …
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**Describe the bug**
When `qmotif` is run with the `include_only` flag set to false and an `INCLUDES` section defined in the ini file, all is well.
When it is run with the `include_only` flag set …
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Hi Li,
This software must provide REPEAT_region.bed, I currently do not know those regions contain STR, is it not possible to use this software?
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Hello. Thank you for making a great tool in TOBIAS. I am using TOBIAS for the first time to identify footprints in my ATAC-seq data. For 2 of my data, the BINDetect runs to completion. However for the…
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Dear all,
I am running delly on 12 samples of a non-model organism with a large, complex and relatively fragmented genome assembly (a couple of hundred thousands contigs). All runs process data up …
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Hi,
I'm using `maelstrom` function for identifying different motifs. I used the following command
`~/miniconda2/bin/gimme maelstrom peaks_gimme.input ~/gencode-transcripts/hg19.fa peaks_combo_r…
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Hi there,
I have been getting the following error message on whole genome samples in germline SV calling mode:
Command: (using singularity image delly_v1.0.3.sif) delly call -g Homo_sapiens_ass…