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I had a fasta file with an space at the end of a sequence line. This caused salmon to fail, somewhat quietly (no output files are produced).
It would be nice to report the specific problem with the i…
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Reported first on Launchpad at https://bugs.launchpad.net/ubuntu/+source/menulibre/+bug/1554682
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**Software Versions**
snakemake 8.18.2
snakemake-executor-plugin-slurm 0.10.0
snakemake-executor-plugin-slurm-jobstep 0.2.1
slurm 23.02.7
**Describe the bug**
The number of threads speci…
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With PR #211, we now include taxa in the clique and synonym information. In order to fully implement #155, we will need to refactor compendium and synonym files to support multiple properties side-by-…
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Directory ./ already exists. Writing into existing directory..
mkdir: cannot create directory ‘.//SCASA_testscasaHNVC02_20230414001259/’: File exists
Preparing for alignment..
Indexing reference.…
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Hello, I am trying to run the apa example but I run into this issue:
bash run_apauser.sh
apauser@groovy:~$ bash apa/docker/example.sh
Traceback (most recent call last):
File "", line 2, in
A…
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- [x] Archive [code_docker_lib](https://github.com/RTIInternational/code_docker_lib). All updates should be in this repo. ` should be used as the new source of truth.
- [x] Add missing docker images.…
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I woke up very early in the morning.
It was rainy out today.
My junior staff took a day off, because he had to go to a funeral in Pohang.
We are in the same team. So I was little busy.
I had a spic…
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Hello
I have some questions regarding the documentation in https://github.com/COMBINE-lab/alevin-fry#a-quick-start-run-through-on-sample-data
I read and worked through the quick-start and pull t…