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I tried to create the viral neighbors database by this line
**krakenuniq-download --db DB 'viral-neighbors' --rettype fasta -R --rsync**
I get the following output.
Downloading viral neigh…
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GDB showed me I get a segmentation fault [here](https://github.com/soedinglab/MMseqs2/blob/master/src/util/convertalignments.cpp#L33C68-L33C88)
```#0 0x0000555555f577fe in printSeqBasedOnAln (out=…
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Two sequence tests are failing intermittently in multiple test environments. These environments include Travis for incubator-openwhisk and incubator-openwhisk-cli. From the invoker logs, it seems the …
dubee updated
5 years ago
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As a developer, I want to have an easy way to run unit and integration tests, so that I can easily maintain them.
**Acceptance Criteria**
- [ ] An example unit and integration test is easily runna…
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Hey! I am planning to use TRUST4 in order to extract TCR sequences from bulk whole mRNA seq (single end). I am puzzled about what reference sequence to use for this. Since I would like to evaluate clo…
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Hey all, I am starting to try to integrate kraken2 in my Mothur pipeline. I really love Mothur, but the taxonomic assignation is not optimal for my situation. This is a work in progress so far as I am…
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*Issue migrated from trac ticket # 237*
**component:** kunlun-storage | **priority:** major
#### 2021-11-22 10:15:04: @david-zhao created the issue
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> In kunlun-storage-8.0.26, create the kunlu…
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Could I please ask if you might be willing to discuss a few questions?
1. Do you have any advice for users regarding which reference genome sequence we should use?
2. Should we exclude the non-chr…
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Hi - I stumble upon your tool HLApers and the associated library hlaseqlib. I find the method `hla_read_alignment` quite interesting as you know, the IMGT database does not contain the complete sequen…
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**Issue type:**
[ ] question
[ ] bug report
[X] feature request
[ ] documentation issue
**Database system/driver:**
[ ] `cordova`
[ ] `mongodb`
[ ] `mssql`
[ ] `mysql` / `mariadb`
[X] …