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We should push a version of 1.1-7 soon (primarily to get the scaled-gradient convergence test pushed out to the world so people will stop asking ...)
My thoughts on release-critical tasks:
- resolve …
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Lesson 2 'Residuals' of the Regression Models swirl course reads:
`This lesson corresponds to Regression_Models/01_02_linearRegression.`,
refering to `https://github.com/DataScienceSpecialization/cour…
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We should also look for `library` calls in `.Rmd`, `.Rnw` files.
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Need someone (or several people) who are not me go through two main BAMMtools documentation sections: postprocess and rateshifts. See if these examples work as coded in sphinx and if you can follow t…
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Hi guys, I enjoyed seeing you at CYTO. I tried installing SingleCellAssay using install_github('SingleCellAssay', 'RGLab') on Rstudio 0.97.336 and R version 2.15.3. I got an error relating to the vi…
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Hi Erik,
The RMBXCMS vignette currently has the last section "commented out" via
`=`
The code there fails with
```
> msmsPeaklist msmsPeaklist@files msmsPeaklist
> msmsPeaklist@files
[1] "/vo…
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`BBmisc::makeProgressBar()` outputs to the standard output. The preferred is to output to standard error for such messages, cf. message(). The problem with sending this to stdout is that report gene…
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http://cran.r-project.org/doc/manuals/r-devel/R-exts.html#Writing-package-vignettes
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The code blocks included in the docs are sometimes missing the leading ">" e.g.
```
library("BAMMtools")
```
instead of
```
> library("BAMMtools")
```
This should be one or the other. _without_ …
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Attempts to rebuild the vignette fail because the bib file is not defined.