-
Hi Vadim,
I'm running DIA-NN in FragPipe. Library was DDA phospho. I see that it says PTM scoring is enabled by default for phospho, but I was hoping to look at the PTM.Q.Value column regardless. A…
-
Hi,
I was just looking more closely at the functions used to generate the in-silico digested genome. I was wondering why the end site of the first restriction enzyme is defined as the end site of t…
-
Hi,
I'm using bismark_genome_preparation to in-silico bisulfite convert the reference genome.
```
wget ftp://ftp.ensembl.org/pub/release-90/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.toplev…
-
Hi!
I would like to use 1.6 billion Illumina reads for de novo transcriptome assembly by Trinity - and for genome scaffolding, with reads being mapped by HiSat2 to a genome pre-assembly for scaffol…
-
# Open Grant Proposal: `LabDAO + Bacalhau Core Integration`
**Name of Project:** LabDAO + Bacalhau Core Integration
Full [grant proposal writeup available here](https://docs.google.com/document/…
-
Currently Cat. 4 is designed to consider high impact in silico variants as well as de novo. This category should be split in the following way:
- in silico classification moves to a new category 'S…
-
Hi, the tool works well with structures downloaded from the alphafold database, but I'm having trouble making it accept cif files that come out of other programs, and especially custom colabfold predi…
-
Dear Ecotyper team,
I tried to run Tutorial 4 - de novo discovery of Cell State and Ecotypes in bulk expression data - with my own bulk RNAseq data.
After setting up Ecotyper and the additional re…
-
```julia
using DifferentialEquations, Optim, LinearAlgebra
function f(dxdt,x,p,t)
dxdt[1] = -p[1]*x[1] + p[2]
dxdt[2] = p[1]*x[1]
end
tspan = (0.,8.)
tdata = range(0.,stop=8.,leng…
-
### Prerequisites
- [x] make sure you're are using the latest version by `seqkit version`
- [x] read the [usage](http://bioinf.shenwei.me/seqkit/usage/)
### Describe your issue
* [x] describ…