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From within the mixcr installation directory, I ran importFromIMGT.sh and asked for "Mus Musculus" data, with names "mm:musmusculus".
When I try to run the alignment using -s mm, it crashes as below.…
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My understanding is that clonal sequences which are very similar will be clustered together after alignment, and a "consensus" sequence will be used. So the "clone count" refers to all occurrences of …
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$ mixcr importFromIMGT
Starting importFromIMGT.sh script
By using this script you agree to the terms of use of IMGT website. (see http://www.imgt.org/ for details).
Press ENTER to continue or other ke…
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I find '*', '~', '-' in CDR3, what does each of them means? Thanks.
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- add options `--filter-out-of-frames` and `--filter-stops` to `export`
- rename `-presetFile` with `preset-file` in `export`
- rename `-listFields` with `list-fields` in `export`
- add description fo…
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Does tcR support monkey TCR? I found segments.alphabets support human and mouse only. Could you please add monkey TCR. There are 59 TRBV and 13 TRBJ genes of monkey in IMGT.
Can I analyse the IMGT re…
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