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Hi @oushujun! firstly, thank you for establishing EDTA pipeline, it's very useful for TEs annotation of non-model organism genome and has helped me a lot.
I have a small question about curatedlib p…
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**What do you want to know?**
In my output files, there is no tbl file.
command:`time RepeatMasker -parallel 30 -species murinae -html -gff Mus_musculus_c57bl6nj.C57BL_6NJ_v1.dna.toplevel.fa`
* H…
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It called my attention to find the same ID (column 15) being shared between elements that have different names (col. 10). This seems to be caused by using information coming from two consecutive align…
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```
R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* preparing ‘AnnotationHub’:
* checking DESCRIPTION meta-information ... OK
…
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I am trying to configure RepeatMasker 4.1.4 with Dfam 3.7 (h5).
**Reproduction steps**
Download Dfam3.7 (curated)
```
cd RepeatMasker/Libraries
wget https://www.dfam.org/releases/Dfam_3.7/f…
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Dear @oushujun ,
While running LTR_retriever previously successfully on multiple genomes, I am currently experiencing an issue similar to Issue #134
All seems to run fine up to a point where th…
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Hi @oushujun,
I am running EDTA as follows:
`EDTA.pl --step all --curatedlib ../Brassicaceae_repbase_all_march2019.fa --sensitive 1 --evaluate 1 --anno 1 --threads 10 --genome athchr1.fasta`
I …
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![image](https://user-images.githubusercontent.com/105265293/201927203-e240b805-cb51-4c56-8168-80ca6ff2ab54.png)
but, the repeatmasker directory has a Library subdirectory?
![image](https://user…
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Hello,
Thanks for creating this tool! I'd really like to use it. However, I'm a bit confused about how to parse all the output files from the many repeat identification tools.
I would apprecia…
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Hello,
Would it be possible for you to share the original .gtf you used to generate the pre-built index (https://labshare.cshl.edu/shares/mhammelllab/www-data/TElocal/prebuilt_indices/hg38_rmsk_TE.…