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Hi Koshlan!
I have more of an inquiry rather than an issue for you.
First of all, thank you for publishing and maintaining TCRdist2. I came across Bradley's paper a few months ago and I have been…
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### Objective: As a user with a pipette, I would like the DCP to process 10x v3 data so that I can submit such data to the DCP and view the results in the data store, matrix service and data browser. …
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Dear Hannah,
Thank you for your quick response, you are very helpful.
I still have 3 questions below, if possible, could you give me some tips? Thank you so much!
1. What is the reason why "y…
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I have 12 10X Genomics Chromium single-cell RNA libraries. I want to perform cell to cell comparisons as well as between library comparisons. This would require that sequencing depth be normalized acr…
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Hello,
We are having issues on running Canu on our cluster, the error says:
canu failed with 'can't configure for SGE'.
The command is: /opt/canu/Linux-amd64/bin/canu -d /home/../250k_assembly -p tes…
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This ticket will track the re-ingestion of the 16 CBeta datasets in production against the Q2 metadata schema snapshot.
Re-ingestion process will follow the plan [here](https://docs.google.com/doc…
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Hi,
I have pooled hg19 + mm10 scATAC-seq data, 10X, CellRanger v3 output. Wanted to run signac MergeWithRegions for two different samples, made with same method. Since the data is mixed-species, I …
mliiv updated
4 years ago
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I have two data sets that have I preprocessed separately. One of the data sets is the normal (reference) cells and the other are the tumour (observation) cells.
In this case, would I have to integ…
s2hui updated
4 years ago
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Hi Salmon Team,
I have single-cell sequencing data generated with an approach derived from SCRB-seq approach (https://www.nature.com/articles/s41467-018-05347-6). The data looks more less like Drop…
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This is a very useful tool! Thanks for developing.
I have a question. I want to use the tool to identify the normal cells from single cells by using the infercnv. There are lots of output files.Whi…