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Hi!
We are trying to run the pipeline and are getting this error. I'm unsure if it's a bug in the pipeline or something wrong with our code. Running CentOS 6.8. Here is the output of our most recen…
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bisulfite sequencing \(obo:OBI\_0000748\) should have more specific subclass of "DNA methylation profiling by high throughput sequencing assay" \(obo:OBI\_0001266\) as they are sequencing assay's
Rep…
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--Hi,
which bisulfite reads aligner do you recommend to then use MethylDackel, several aligners exist:
bwa-meth: https://github.com/brentp/bwa-meth
ERNE-BS5: http://erne.sourceforge.net/
RMAPB…
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Add synonyms WGBS and whole genome bisulfite sequencing to OBI_0001863
Reported by: vsmalladi
Original Ticket: [obi/obi-terms/727](https://sourceforge.net/p/obi/obi-terms/727)
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## Bug Report
### Affected tool(s)
CollectAlignmentSummaryMetrics
### Affected version(s)
picard-2.9.0-9-gb9978f5-SNAPSHOT-all
### Description
The logic of
` …
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Hello, I'd like to request a new ontology term for the MCC-Seq assay, with the following information:
Preferred label: "MethylC-Capture Sequencing"
Alternative labels: "MCC-Seq", "Capture Methylom…
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Hi Dr Krueger,
in the M-bias plot (see file attached), it seems that methylation rate is not stable across read positions. I also noticed the page at https://sequencing.qcfail.com/articles/library-e…
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term: TAB-seq
alternative term: Tet-assisted bisulfite sequencing
definition: Uses the Tet enzyme to prepare DNA for subsequent sequencing applications by differeniating 5-hydroxylmethylcytosine (5h…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/databio/MIRA
Confirm the following by editing eac…
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## Bug Report
### Affected tool(s)
ValidateSamFile and possibly other Picard tools with the same dependencies
### Affected version(s)
- [x] Latest public release version 2.9.2
### Descripti…