-
```
What steps will reproduce the problem?
1. Use touch screen/on screen keypad to enter library card.
2. See library card number on screen!
What is the expected output? What do you see instead?
I ex…
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If MATES can detect TE expression using 10X Visium data, I encountered the following question while running the function bam_processor.split_bam_files with the Space Ranger outputs of 10X Visium data:…
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Hi,
is it possible to request the data from a different source than the Baidu Cloud. It is inaccessible.
Thanks
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Hello. I started with the [Loading 10x Genomics Data](https://immunarch.com/articles/web_only/load_10x.html) tutorial, downloaded the CSV files from [10X website](https://support.10xgenomics.com/singl…
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I like to use Github issues as TODO lists. First item of business: conflicting UMIs.
## The problem
UMIs are used by `demuxlet` and appear in the `UB` tags within the BAM file. When we create doub…
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My workflow keeps failing at the reference_assembly:map_reads step:
```
ERROR ~ Error executing process > 'pipeline:reference_assembly:map_reads (1)'
Caused by:
Process `pipeline:reference_a…
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This is my first foray into single cell. I'm working in galaxy and I'd like to run seurat on data from your paper to develop a pipeline, but it appears that the galaxy wrapper takes a tsv instead of …
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Hi Alex,
I was wondering if it's possible to reproduce the `Cell Ranger`-style read trimming that's done on 3' and 5' 10x reads (with only one biological read - paired-end case is a bit more clear…
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Hi! I am fairly new to the Scenic plus tool. I have been able to successfully install and get the snakemake workflow running. I have been working with non multiome data. My workflow runs just fine unt…
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Running TRUST4 on 3' 10X genomics RNA-seq results in B cell inference where no B cells are present, any advice on fixing this issue?