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Linking experimental data with SBOL designs is becoming critical to a number of important projects. Therefore this SEP introduces a Design-Build-Test data model for SBOL. [SEP 14 is here.](https://git…
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-[ ] Protein Data Bank
-[ ] Biopython
-[ ] PDBEditor: http://www.bioinformatics.org/pdbeditor/wiki/ & http://journals.iucr.org/d/issues/2009/04/00/kw5007/index.html & https://sourceforge.net/projec…
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Mammalian rod cells contain stacks of structures called "membrane discs". There is some controversy about how they form that affects conclusions about the spatial relationships of components of nascen…
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I suggest a significant change in notebook 4 (may affect notebook 5 too).
First I would like to avoid the usage of the MSM method 'coarse_grain' because that currently just calls a HMM estimation.…
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Was there ever a discussion about how we(applications) should be setting the bond order for aromatics or resonance bonds. Did the idea of a 5th bond type (aromatic/resonance) ever come up?
I ask …
danpf updated
5 years ago
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**For which schema is a change/update being suggested?**
type/protocol/imaging/imaging_protocol.json
**What should the change/update be?**
This is an umbrella ticket covering a number of cha…
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There are a number of enhancements that the line plot component needs:
- [x] Zooming in Y and XY
- [x] Horizontal markers (e.g. for mean values)
- [x] Rectangular markers (non-interactive) (e.g. …
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Shouldn't these terms be under GO:0098019 virus tail, major subunit:
GO:0098027 virus tail, sheath- the definition should specify myophage
GO:0098028 virus tail, shaft
GO:0098026 virus tail, tube-…
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I'm thinking about how to make the API cleaner. Basically, we only have two types of computations:
* **Computation on edge**. It takes the states of the src and dst nodes, and the old states of the e…
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## Description of new feature
Export
- [ ] Proteins
- [ ] Chemicals (small molecules)
- [ ] General interaction
- [ ] Expression interaction
- [ ] Phosphorylation interaction
- […