markovmodel pyemma_tutorials issues

markovmodel / pyemma_tutorials

How to analyze molecular dynamics data with PyEMMA

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attribute error while fetching pdb

#201 nagarnoopur opened 4 months ago
0
Issues on MSM estimation and validation in Notebook 00

#200 Owen2015 opened 11 months ago
1
Issue on clustering after changing the pip installation and trying conda installation

#199 andresilvapimentel closed 2 years ago
2
save_trajs for multiple trajectories

#198 orthonalmatrix closed 2 years ago
5
mlags meaning

#197 andresilvapimentel closed 2 years ago
1
chapman-kolmogorov test Error

#196 sundelinllnl closed 5 years ago
2
Error installing PyEMMA

#195 bamal closed 5 years ago
2
util.contexts.settings not imported

#194 marscher closed 5 years ago
0
raw_latex directives can not be converted to mathjax

#193 marscher closed 5 years ago
0
Final published version

#192 cwehmeyer closed 5 years ago
0
remove link to PDF on local FTP server

#191 thempel closed 5 years ago
1
Update manuscript.tex

#190 dwsideriusNIST closed 5 years ago
3
missing https:// in the github repository link on first page?

#189 mrshirts closed 5 years ago
3
prepare v1.0

#188 cwehmeyer closed 5 years ago
0
changes-cw

#187 cwehmeyer closed 5 years ago
0
TODOs before ASAP version

#186 cwehmeyer closed 5 years ago
2
some edits/consistency changes, and TODOs

#185 brookehus closed 5 years ago
0
revision-cw

#184 cwehmeyer closed 5 years ago
3
[manuscript] update affiliation

#183 thempel closed 5 years ago
0
Figure 4 caption

#182 thempel closed 5 years ago
0
NB08: make plot compatible with new matplotlib version

#181 thempel closed 5 years ago
2
matplotlib rendering error

#180 marscher closed 5 years ago
8
More linking between notebook 00/06, other minor fixes.

#179 psolsson closed 5 years ago
1
affiliation update

#178 brookehus closed 5 years ago
0
circleci is taking forever

#177 brookehus closed 5 years ago
2
[manuscript] [WIP] simplify HMM section, restructure citations

#176 brookehus closed 5 years ago
9
revision cw

#175 cwehmeyer closed 5 years ago
0
fix typo

#174 brookehus closed 5 years ago
0
linking between NB 01-08 & from manuscript to NB 01-08

#173 thempel closed 5 years ago
2
added subsection on how to deal with huge datasets

#172 marscher closed 5 years ago
1
Specific changes to the manuscript

#171 cwehmeyer closed 5 years ago
11
Better connection between manuscript and the specific tutorial notebooks

#170 cwehmeyer closed 5 years ago
3
revision fn

#169 cwehmeyer closed 5 years ago
1
revision fn

#168 cwehmeyer closed 5 years ago
1
Add pre-rendered notebooks (gist)

#167 psolsson closed 5 years ago
1
revision cw

#166 cwehmeyer closed 5 years ago
0
Revision cw

#165 cwehmeyer closed 5 years ago
2
[nb05] motivate pcca usage, destinct hmm

#164 marscher closed 5 years ago
0
[nb02] motivate usage of kmeans and reg space (use case, run time etc)

#163 marscher closed 5 years ago
0
Simon revision

#162 psolsson closed 5 years ago
2
Check figures and placement

#161 psolsson closed 5 years ago
1
[nb01] Better motiviation why to compare different features.

#160 marscher closed 5 years ago
0
[launcher] deploy static files to users copy of notebooks

#159 marscher closed 5 years ago
0
Conda package lacks static content

#158 cwehmeyer closed 5 years ago
1
re-build bibliography before resubmission

#157 thempel closed 5 years ago
1
Review

#156 marscher closed 5 years ago
2
Revision cw

#155 cwehmeyer closed 5 years ago
1
Advanced methods section

#154 psolsson closed 5 years ago
0
launcher not working

#153 cwehmeyer closed 5 years ago
0
Revision TH

#152 thempel closed 5 years ago
6