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We discussed two issues surrounding an ontology request for a new term maintenance of differentiated cell state, https://github.com/geneontology/go-ontology/issues/12543
The first involved what is …
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https://mp.weixin.qq.com/s/uRdDxx20HAeFx08ZOQA6iw
ixxmu updated
2 years ago
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Hi! I just installed TED, but I couldn't find function, _norm.to.one_.
```
> install_github("Danko-Lab/TED/TED")
Downloading GitHub repo Danko-Lab/TED@HEAD
Error in utils::download.file(url, path,…
Ci-TJ updated
2 years ago
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Hello,
Thank you for developping such a useful package.
I was trying different arguments in the infercnv::run function using exactly the same input (reference, observation, annotation file and g…
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Hi,
Thank you for developing this great tool. I ran copyKAT on my tumor samples and I found the opposite results of what I was expecting. All stromal cells - fibroblasts, immune, melanocytes, were …
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Hi, there,
I am a new for integration and inferCNV. I have four samples(two from normal people and two from patients with chr20 deletion) . I integrated these four samples together using finding …
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Dear Dr Zheng,
Thank you for your sharing the MEBOCOST. I downloaded the demo data: demo_HNSC_200cell.h5ad and run the codes from your github in my Jupyter lab, however, I am confused that the diffe…
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I created an infercnv object.
infercnv_obj = CreateInfercnvObject(raw_counts_matrix=counts_matrix,
annotations_file="/home/shaofeng/HM/CNV/tumor.sample.txt",
…
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---
id: vcell
version: 7.4.0.48
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.48/biosimulators.json
specificationsPatch:
version: 7.4.0.48
image:
url: ghcr.io…
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Please provide the text that should appear in the Molecular Targets Platform widget containing the `gene-disease-gtex` TPM plots in a format that matches the existing Open Targets widgets. FNL will im…