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_tl;dr
The current variant index has several shortcomings that affect our production infrastructure, our ability to update it to a newer GnomAD version and our ability to consider rare variants withi…
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Hello, I’ve been trying to reproduce some parts of your work. And noticed that the Model 2 pipeline works all right and seems to capture the abdominal aorta region quite accurately (Great!).
However…
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Hi,
I'm trying to work with the imputed data from UK Biobank. I'm using the RStudio workbench through dnanexus (as data can't be downloaded). I keep running into errors with space to create the .bk …
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**Issue**
I have used the recommended input files but am getting an error. This is the exact line of code I used to run PRSice:
`Rscript PRSice.R --dir . --prsice PRSice_mac --base Base_Data.gz --ta…
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Hi,
Thank you for the great documentation, it is really helpful! I have one question.
I have many different snakemake workflows, but I am using the same profile for all of them, so they all are…
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Hi,
I got this error message when fitting the null model (SAIGE step1) on a UK Biobank binary trait:
`Loading required package: optparse
Error in SPAtest:::Saddle_Prob_fast(q = qtilde, g = g, m…
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```
[dlq@beluga2 20227]$ uname -r
3.10.0-1160.76.1.el7.x86_64
```
```
[dlq@beluga2 20227]$ clinica --version
clinica, version 0.7.2
```
```
[dlq@beluga2 20227]$ clinica convert ukb-to-bid…
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Hi Florian!
I am attempting to computer some PRS weights using LDpred2-auto with the `snp_ldpred2_auto()` function.
This has began to throw the following error in every instance of my current se…
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**Describe the bug**
Error: No valid variant remaining
Error:
Execution halted
Please always include the log file generated by PRSice.
My final log file is as follows:
PRSice 2.3.3 (202…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/vjcitn/BiocHail
Confirm the following by editing …