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# Co-ordination with Nelson/Jeremy
## Cell type ontology descriptions
- [ ] #20
- [x] #22
- [ ] Alida to generate spreadsheet with BG taxonomy node name; CL label, CL symbol; CL description; CL ref…
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Hi @oesteban and @eilidhmacnicol ,
I was curious what the status of nirodents is. I've been spending much of my day looking for a good masking strategy for some mouse data and I came across the OSF…
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## Summary
Add option to enable self-definition of brain mask.
Previous version uses the brain mask generated from fMRIPrep. However, in some cases, the brain mask is not accurate. It is better to a…
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**Describe the bug**
| memory limit specified | memory used by ANTs |
| --- | --- |
| 16 Gb | 23 Gb |
| 16 Gb | > 18 Gb |
| 40 Gb | 45 Gb |
This is particularly a problem on clusters t…
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- CZI cellxgene: https://github.com/chanzuckerberg/cellxgene - React + Redux app for exploration of large scale scRNA-seq datasets
- Google Neuroglancer: https://github.com/google/neuroglancer - WebG…
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Hi!
I found the group 1 data in MNI BITE website: http://nist.mni.mcgill.ca/bite-brain-images-of-tumors-for-evaluation-database/. But there are only 2d/3d ultrasound data without the tracking 4*4 pr…
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- make sure that it is the `..._acq-MPRAGE_T1w_reoriented_brain_seg.nii.gz` which contains the final segmentation of gray/white/csf. (and not `_pveseg.nii.gz`). Sample directory `/home/chrispycheng/p…
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Greetings,
I recently found this tool (thanks to a Neurostars answer by @gdevenyi) and have been testing it with a mouse model of neurodegeneration (ex-vivo imaging, 75 microns). I based things on …
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Hey, so I am on to writing some custom rules and they are jarring my brain a bit. From the docs it states
> When ElastAlert queries Elasticsearch, it will pass all of the hits to the rule type by cal…
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### Relevant telegraf.conf
```toml
[[inputs.procstat]]
exe = "influxd"
tagexclude = [ "pid_finder", "exe", "pidfile" ]
[[inputs.procstat]]
exe …