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Hi,
I'm following the assembly workflow for MinION data presented in [this preprint](http://biorxiv.org/content/early/2015/03/11/015552) from Nick Loman, Joshua Quick and Jared Simpson. To assess re…
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We have been working hard on a database and some [cool demos](https://github.com/phageParser/phageParser/tree/master/demos) of analysis you can do with it. Our dream is to build a web front end so tha…
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Hi,
I have been trying to run the chip-seq workflow of seq2science. It starts but stops when 7% of the jobs are done.
```
seq2science --version
seq2science: v0.5.1
```
**To Reproduce**
Plea…
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Thank you for developing this convenient software. We successfully ran a test with a small dataset. However, during the full-scale analysis, the LAST software has been running for 15 days without comp…
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Hi,
Thanks very much for the great tool. We've been trying CRAQ out in several of our assembly projects and we sometimes run into strange behavior where analysis seems to finish ok, but low_confidenc…
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I am interested in structural variants/copy number variants (SVs/CNVs) of whole genome sequencing data of patients with Epilepsy, but I do not know where to commence with the analysis once the output …
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Here's a quick way to reproduce:
```
# download GRCH38 and make sure there's no index
rm -f GRCh38_full_analysis_set_plus_decoy_hla.fa*
wget ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/…
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+ Completeness (A1=both UTRs, A2=near-complete, B=most, C=something). ? @rchikhi QC + @taltman UTR annots?
+ Annotation of genes and other features (@taltman pipeline).
+ Find closest known full-len…
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Where can I find more information on how to create the panel and the sample fies?
I went through the [paper](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6752313/pdf/41436_2019_Article_475.pdf) an…
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Hello, I'm getting odd errors when using lower --proportion-repeat in strling extract. For example, when running this command:
strling extract -f GRCh38_full_analysis_set_plus_decoy_hla.fa -p 0.4 N…