quinlan-lab STRling issues

quinlan-lab / STRling

Detect novel (and reference) STR expansions from short-read data

MIT License

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issues

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small test dataset

#122 dalyasalih19 opened 3 months ago
1
Comparing STR length from STRling, which value would be appropriate to use?

#121 chanhee22kim opened 8 months ago
0
Multiallelic STRs

#120 themkdemiiir closed 9 months ago
1
strling-outliers.py: Incompatibility with newer Pandas version

#119 ryanmcggg opened 9 months ago
4
Typo in command line help

#118 hdashnow opened 11 months ago
0
STRling warning in [Joint call str loci across all samples]

#117 chanhee22kim closed 1 year ago
2
Docs

#116 hdashnow closed 1 year ago
0
add empty line for code block rendering on github

#115 kew24 closed 1 year ago
1
SIGSEGV: Illegal storage access. (Attempt to read from nil?)

#114 christopher-schroeder closed 11 months ago
19
L.start <= R.start

#113 christopher-schroeder opened 1 year ago
3
report 0-len alignments in debug mode.

#112 hdashnow closed 1 year ago
2
Merge by chrom workflow

#111 hdashnow closed 1 year ago
0
gene and variant scores

#110 naamaeb closed 1 year ago
0
Reduce memory

#109 brentp closed 2 years ago
2
Is it okay to apply STRling on PCR-based WGS dataset?

#108 a7420174 closed 2 years ago
9
STRling warning message and empty binaries

#107 hdashnow opened 2 years ago
0
zero length reads

#106 christopher-schroeder closed 1 year ago
5
Exclude NaN rows in STRs.tsv output

#105 hdashnow opened 2 years ago
0
0-length intervals

#104 hdashnow opened 2 years ago
0
Assertion error for reads without sequence

#103 christopher-schroeder opened 2 years ago
5
Issue with low proportion_repeat

#102 mhguo1 opened 2 years ago
7
Binary build error

#101 hdashnow closed 3 years ago
3
glob file patterns

#100 hdashnow closed 3 years ago
0
How are allele sizes estimated?

#99 hchetia closed 3 years ago
4
Travis

#98 brentp closed 3 years ago
1
closes #96

#97 brentp closed 3 years ago
2
SIGSEGV: Illegal storage access. (Attempt to read from nil?)

#96 hchetia closed 3 years ago
3
v0.5.0 Release candidate

#95 hdashnow closed 3 years ago
0
[WIP] Use Huber's estimates for outlier test

#94 hdashnow closed 3 years ago
0
Inconsistent soft-clipped reads may impact length estimates

#93 hdashnow opened 3 years ago
0
Min support

#92 hdashnow closed 3 years ago
0
Full diploid genotypes for 2 short alleles

#91 seboyden opened 3 years ago
1
Ignore inconsistent soft-clips

#90 hdashnow closed 3 years ago
0
fix typo vertsion->version

#89 hdashnow closed 3 years ago
0
Docs and typos

#88 hdashnow closed 3 years ago
0
add conda install instructions noting error message

#87 hdashnow closed 3 years ago
0
conda install error message (still installs)

#86 hdashnow opened 3 years ago
1
fixing typo

#85 wdecoster closed 3 years ago
1
Outlier script bugfix and bump version

#84 hdashnow closed 3 years ago
0
update docs with conda install and outlier script

#83 hdashnow closed 3 years ago
0
Outlier rename rebase

#82 hdashnow closed 3 years ago
0
Outlier rename

#81 brentp closed 3 years ago
1
Outlier rename

#80 brentp closed 3 years ago
0
v0.4.0 release candidate

#79 hdashnow closed 3 years ago
0
Merge tid problems

#78 hdashnow closed 3 years ago
0
More sensible defaults

#77 hdashnow closed 4 years ago
0
Checksum mismatch in cram decode

#76 nmmsv closed 4 years ago
6
Pipeline memory for joint calling

#75 hdashnow closed 4 years ago
0
Fragment bounds

#74 hdashnow closed 4 years ago
0
Fragment bounds

#73 brentp closed 4 years ago
0