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Hi Luke,
Thanks again for the package, I use it every day!
I have a huge H5AD file of 40k genes and 3.7M cells. I load it into R with `readH5AD(...,use_hdf5=TRUE)`. After QC and filtering I wan…
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Hi, I notice that you have the ability to simulate multiomic data, but I have some questiosn about the simulated data.
![image](https://github.com/ZhangLabGT/scMultiSim/assets/43333475/8daf4946-32b…
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Hi there,
Thanks for the tool.
I saved the stereo-seq data as a .h5ad file according to the web manual (adata = st.io.stereo_to_anndata(data, flavor='scanpy', output='stereo_out_T312.h5ad)), and…
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I've tried installing all the latest releases on macOS Sonoma on an M1 Pro and none of them open (including the release that supports both `arm64` and `x86_64`).
I've done succesfully installed vip…
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If we use BFG to remove all blobs larger than 1M, we can reduce the openpipeline repo from 200MiB to around 44MiB. We can probably reduce it even further if we set the threshold even lower. @DriesScha…
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### Description of the bug
Hello,
a previous run only providing the unfiltered data worked fine.
I have now added the filtered data from a rerun of scrnaseq just to increase my options.
That addit…
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**Describe the bug**
rapids_singlecell.tl.umap will occasionally generate embeddings with spuriously large values (e.g., a small number of points that are very large).
Details: I start with a …
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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Hello @heihaizhengdong , I’m very interested in ClusterMap. I’d like to ask several questions which are crucial to improving ClusterMap
# Questions
1. Is the position of the centroid determined …
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Hi, SCSA team. I'm running SCSA from a Scanpy output, but found most clusters were 'endothelial' with '?' in the Type column. I got the output by reanalysing a published lung dataset (PRJEB31843). As …