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SCSA
SCSA: cell type annotation for single-cell RNA-seq data
GNU General Public License v3.0
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how to create my reference database to use SCSA
#34
chunyang-sea
opened
1 week ago
0
ValueFrror: MultiTndex bas nosingle backing array. Use "MultiIndex.to numpy( ) to get a NumPy array of tuples
#33
yuhan1li
opened
5 months ago
2
excel(ms-excel) output error
#32
krayon4river
opened
6 months ago
0
Which data set is used for Multiome data analysis
#31
kiranpatil222
opened
9 months ago
1
This works as described
#30
TyberiusPrime
opened
1 year ago
0
Issues using pandas >2.0 and pickle load
#29
Flope
opened
1 year ago
1
Request an update of whole.db
#28
myshu2017-03-14
closed
1 year ago
6
Output does not match
#27
clee700
opened
1 year ago
1
Documentation update - Installation also requires openpyxl
#26
jjacobson95
opened
1 year ago
1
Allow input column name avg_log2FC for Seurat
#25
jjacobson95
opened
1 year ago
1
Monocle Compatibility
#24
jasonmli
opened
2 years ago
1
Specify that output be comma delimited
#23
jasonmli
opened
2 years ago
0
Can I use this with counts tables and without the cellranger, scanpy, seurat, etc. input?
#22
jolespin
opened
2 years ago
1
No Z scores given for a particular cluster
#21
matt-sd-watson
opened
2 years ago
1
scores value to 3digit after decimal
#20
Ankita-1211
opened
2 years ago
0
MultiIndex has no single backing array. Use 'MultiIndex.to_numpy()' to get a NumPy array of tuples.
#19
YizhenChen
opened
2 years ago
4
Conflict with header format of Seurat FindAllMarkers
#18
olgabaranov
closed
2 years ago
1
TypeError: __cinit__() takes at least 2 positional arguments (0 given)
#17
cnwokolo2
opened
2 years ago
6
Gene num in GO
#16
jon-xu
closed
3 years ago
1
Is there an alternative for whole.db?
#15
hwoihann
opened
3 years ago
2
updated markers?
#14
dnev1551
opened
3 years ago
3
Selecting reference tissue of interest
#13
alievakrash
opened
3 years ago
4
Support FindConservedMarkers() as input from Seurat
#12
spadavec
opened
3 years ago
1
Cell Ranger weight valuse error
#11
Qtasnim
opened
3 years ago
3
Weight column Error
#10
Qtasnim
closed
3 years ago
0
ValueError
#9
leeyoyohku
opened
3 years ago
1
TypeError: 'NoneType' object is not iterable
#8
levinhein
opened
3 years ago
1
annotate with cellranger file
#7
phoebee-h
opened
3 years ago
6
May I select multiple tissues at the same time
#6
listen2099
closed
3 years ago
4
Possible to accept scran::findMarkers results?
#5
Lei-Guo
opened
4 years ago
5
Database weight matrix
#4
Jayjay601
opened
4 years ago
1
Zero marker sets found -- error
#3
jhb1980
closed
4 years ago
1
accept scanpy output
#2
Gibbsdavidl
opened
4 years ago
2
put citation in readme.
#1
Gibbsdavidl
closed
4 years ago
1