bioinfo-ibms-pumc SCSA issues

bioinfo-ibms-pumc / SCSA

SCSA: cell type annotation for single-cell RNA-seq data

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issues

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database: get all celltypes in overview

#36 RoelsJana opened 1 month ago
0
SCSA need numpy version less than 1.26 and the version of pandas should be less than 2.0

#35 LengYang90 opened 3 months ago
0
how to create my reference database to use SCSA

#34 chunyang-sea opened 4 months ago
0
ValueFrror: MultiTndex bas nosingle backing array. Use "MultiIndex.to numpy( ) to get a NumPy array of tuples

#33 yuhan1li opened 9 months ago
2
excel(ms-excel) output error

#32 krayon4river opened 10 months ago
1
Which data set is used for Multiome data analysis

#31 kiranpatil222 opened 1 year ago
1
This works as described

#30 TyberiusPrime opened 1 year ago
0
Issues using pandas >2.0 and pickle load

#29 Flope opened 1 year ago
1
Request an update of whole.db

#28 myshu2017-03-14 closed 1 year ago
6
Output does not match

#27 clee700 opened 2 years ago
1
Documentation update - Installation also requires openpyxl

#26 jjacobson95 opened 2 years ago
1
Allow input column name avg_log2FC for Seurat

#25 jjacobson95 opened 2 years ago
1
Monocle Compatibility

#24 dajsfiles closed 4 months ago
1
Specify that output be comma delimited

#23 dajsfiles closed 4 months ago
0
Can I use this with counts tables and without the cellranger, scanpy, seurat, etc. input?

#22 jolespin opened 2 years ago
1
No Z scores given for a particular cluster

#21 matt-sd-watson opened 2 years ago
1
scores value to 3digit after decimal

#20 Ankita-1211 opened 2 years ago
0
MultiIndex has no single backing array. Use 'MultiIndex.to_numpy()' to get a NumPy array of tuples.

#19 YizhenChen opened 3 years ago
4
Conflict with header format of Seurat FindAllMarkers

#18 olgabaranov closed 3 years ago
1
TypeError: __cinit__() takes at least 2 positional arguments (0 given)

#17 cnwokolo2 opened 3 years ago
6
Gene num in GO

#16 jon-xu closed 3 years ago
1
Is there an alternative for whole.db?

#15 hwoihann opened 3 years ago
2
updated markers?

#14 ajneville opened 3 years ago
3
Selecting reference tissue of interest

#13 alievakrash opened 3 years ago
4
Support FindConservedMarkers() as input from Seurat

#12 spadavec opened 3 years ago
1
Cell Ranger weight valuse error

#11 Qtasnim opened 4 years ago
3
Weight column Error

#10 Qtasnim closed 4 years ago
0
ValueError

#9 leeyoyohku opened 4 years ago
1
TypeError: 'NoneType' object is not iterable

#8 levinhein opened 4 years ago
1
annotate with cellranger file

#7 phoebee-h opened 4 years ago
6
May I select multiple tissues at the same time

#6 listen2099 closed 4 years ago
4
Possible to accept scran::findMarkers results?

#5 Lei-Guo opened 4 years ago
5
Database weight matrix

#4 Jayjay601 opened 4 years ago
1
Zero marker sets found -- error

#3 jhb1980 closed 4 years ago
1
accept scanpy output

#2 Gibbsdavidl opened 4 years ago
2
put citation in readme.

#1 Gibbsdavidl closed 4 years ago
1