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Dear Vadim,
we are currently in the process of setting up new DIA-based workflows currently using 1.7.10. One aim is to also use it for SILAC experiments. I went trough the manual and as far as I u…
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Hi Vadim,
thank you so much for your lab's hard work. DIA-NN is an intuitive and seamless tool that is a pleasure to use even for a novice as myself!
I have a bit of a mystery on my hands. I am co…
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Hi @andrefaure , how are you? Long time!
I have a project where I calculate the predicted in silico stability of the folded proteins produced by Alphafold2, and try to see if the calculated stabili…
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We have reads generated from proximal ligation with internal adapters. I was wondering if this tool could search for an adapter and then split the read based on multiple internal adapters being found.…
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Hi Developers!!
I am working with plasmodium and I wish to knockout a gene and see its effect. But in Plasmodium the mitochondrial genes start with "milo" regex.
1. Could you inculcate this opt…
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Hi,
I have a number of datasets that I mapped against different assemblies using Bowtie.
I found that some map better to one and others better to the alternative assembly.
My idea was to extrac…
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CellOracle is very opaque with its upper limit for gene expression, making overexpression hard to do. Would it be possible to autocorrect the simulation to the upper limit if excess overexpression is …
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### What happened?
help says deposit fee is in **ORE**
```
$ ironfish deposit --help
Deposit $IRON for testnet points
USAGE
$ ironfish deposit …
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Hello Team VICTRE,
Thank you for developing this wonderful software, and I have recently tried to generate some phantoms of breast. Therefore, I found the format of **_lesionInsert.py_** is very co…
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after reconstructing a field from the velocities,
`dyn.vf.VectorField(adata, basis='umap', M=1000, pot_curl_div=True,
min_vel_corr=0.8, restart_num=500,
cores…