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Is the content of `tephrasedml.py` deprecated? or is this still used? Mainly the experiment class.
With the latest tellurium changes I am not sure if this has been replaced.
If this is replaced, w…
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I just found the following strange behavior:
If I run the model with 1000 points everything works, if running with 1000 steps I get a convergence error.
```{python}
In [10]: r = roadrunner.RoadRu…
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I think the metadata reading is broken.
When trying to read the metadata for the CombineArchiveShowcase one gets empty metadata despite metadata existing for all files.
Output of the test script `…
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When calling `initFromArchive` for files which do not exist or are no zip files the python kernel is aborted.
The c++ library should not kill the python kernel, but catch the runtime_error and return …
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I get segmentation faults with the latest roadrunner on all python versions.
I just tried to update the dependency for tellurium and tests fail.
https://travis-ci.org/sys-bio/tellurium/jobs/286390…
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Antimony can be installed, but not executed in travis environment.
```
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /home/travis/virtualenv/…
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You can probably guess what this is about:) Following https://github.com/NuML/NuML/issues/6, I'm trying to build the entire libSBML/libSEDML/libCombine software stack with namespaces enabled. I'm not …
0u812 updated
7 years ago
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Hi all,
I am trying to read combine archives via the python bindings,
but always get errors about empty XML content when trying to read the archives.
I am not sure what I am doing wrong
``` Python
f…
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A COMBINE Archive file is a ZIP file that contains the SED-ML file and all the models needed by that SED-ML file, as well as a manifest file that lists all the file in the archive. Although it's a ZIP…
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At present, the lifecyle information restricts to the usage of xsd:dateTime. However, in practice, it may be (sometimes) a drag to have to specify this down to the seconds; wouldn't it be possible to …