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Returning DAA results filtered annotation data frame...
Creating pathway error bar plots...
Error in pathway_class_group_mat[unique(daa_results_filtered_sub_df$pathway_class), :
incorrect numbe…
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Hi there!
First of all, thanks for these great tool to interact with Reactome from R.
I'm trying to retrieve the parent pathway for a given event using `getPathways(id, top.level = TRUE)`. Howev…
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the zip has WP2625_r125287 but WP2625_r128704 is on GitHub (matches classic): https://github.com/wikipathways/wikipathways-database/blob/main/pathways/WP2625/WP2625.gpml#L2C116-L2C130
egonw updated
3 months ago
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Currently, pathways are modeled as gene sets in Wikidata. Obviously, the interactions between molecules is crucial information that lends itself to semantic graph representation. We could enhance the …
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Currently it's necessary to open the search dialog to search by pathway id. This should be adapted so it's really fast to search by id, for curation tasks.
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As detailed in the WG deliverable, we should/need to build up the badges for Privacy and make them available as a proof of concept. Then, we can move on to develop pathways for the remaining competenc…
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See http://www.home.ndexbio.org/data-model/
- Use context to abbreviate identifiers namespaces
```
"context":[{
"ncbigene" : "http://identifiers.org/ncbigene/",
"kegg.pathway" : "ht…
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The current annotation service only accepts a Gene symbol and annotates with (or searches for) its GO terms, pathways and biogrid interactions. These needs to be expanded to be able to annotate protei…
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Dear all,
The proposal has been made to obsolete GO:0048015 phosphatidylinositol-mediated signaling.
The reason for obsoletion is that this term is not clearly defined and represents several p…
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Hi!
I want to create the mask with variants from different chromosomes (pathway-based rare variants association). I've found in one of the closed issues the GENPOS in the variants set file doesn't af…