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Hello,
I recently ran into some problems with TCGAbiolinks.
I used the TCGAbiolinks package in april 2018 to download the bladder cancer set and ran some analysis. Unfortunately I don't know which v…
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- [x] I can reproduce the bug
- [ ] Sorry for the lack of REPREX for the moment, would need to redo on a shareable obj. Feel free to ignore this issue, but wanted to report it.
I got an Error on …
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Hello,
I have a problem that didn't occur before while using only 3 data stages. But now that I added a 4th data set there is a problem.
First I did:
```
ce_combined cumulativeCTSSdistribution ->…
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I tried to reproduce the example in the tutorial but was not able to since I cannot create the `methylation` matrix. Using my data I keep encountering the following message error:
> Error in design…
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Hello,
When trying to get Biopax file of the pathway R-HSA-1369062 i got this error :
`
> idx idx
[1] 1
> uri uri
[1] http://identifiers.org/reactome/R-HSA-1369062
100 Levels: http://ident…
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This only seems to an issue when I try to install MOFA2 within a Docker container (using my local Rstudio installation works fine). Though the Docker container has Bioc v3.16 (devel), whereas my local…
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I'm trying to code a function with ggsurvplot that returns a Kaplan Meier curve. I've previously done this with the Kaplan Meier function from the survival package without any problem, but I can't mak…
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I've had this happen a few times when running a shiny app on my laptop with the latest version of shiny from GitHub. After sitting idle for a while it timesout. I can see that happening on a server bu…
vnijs updated
6 years ago
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**Error and context**
I am tryin…
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I just got this running
Note that:
MAF is not inferred even though I am passing Freq col, and I am seeting maf to calculate
## Code
```
columnsnames = echodata::construct_colmap(munged= FAL…