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Hello, I would like to run the code on waymo dataset. However, when I run the following two commands
1. "python -m al3d_det.datasets.waymo.waymo_preprocess --cfg_file tools/cfgs/det_dataset_cfgs/waym…
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Hi,
I am trying to get the taxonomy of several contigs present in a multi-fasta file, but I'm having some issues with the `easy-taxonomy` command, as it is has not completed the assignment of about …
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Thank you for developing the tool. I am having an issue running it. Below is the command I ran with docker.
`docker run -d -v /media/Data_1/tianrm/projects/plasmid_identification/4/testing/plasmido…
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See for instance below error. Something wrong with invalid byte sequences.
```2018-12-15 20:53:41,279 - lexi - {run_lexi_server.py:146} INFO - Received simplification request from user joabingel@gm…
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Hi, I am using stringMLST and I noticed that I got different results for running the same sample more than once. The database changed (updated). What was surprising that some of the assigned ST's in t…
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## Expected Behavior
I'm running this command `result2msa` to generate an MSA from the out files of an mmseqs search command.
The full commandline is:
`mmseqs result2msa /Volumes/DataDisk/netsurf…
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If `config.ini.php` is present, the installation sequence is skipped entirely.
When the required fields are present in the config file (database host, name, password etc), the installation could happ…
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In the output log file:
Creating sequence ID to taxonomy ID map (step 1)...
Sequence ID to taxonomy ID map complete. [0.233s]
Estimating required capacity (step 2)...
Estimated hash table require…
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Hi,
Thanks for putting together this wonderful resource. I've run reCOGnizer before and I am now experiencing an issue with the pipeline suggesting my fasta file has empty queries. I've troubleshoo…
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Hello,
I am getting the following error for functional profiling when running the pipeline (this is the log):
diamond v2.0.15.153 (C) Max Planck Society for the Advancement of Science
Documen…