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Hello,
I am trying to build standard kraken2 database. I have used the default command:
`kraken2-build --standard --threads 8 --db kraken_standard`
The database is created without any errors but …
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Using the standard 16gb library and some bacterial reads we seem to get empty taxonomic level fields in the kraken2 report file. For example, the root and bacteria lines have no taxonomic level.
br…
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it doesn't look like complete protein fasta
I have blastp random sequence ">1119" from it - no hits into nr.
I have blastp first 80 sequences - only very weak hits.
"In this step, we run all pr…
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Hi @wegnerce ,
Im currently working on metatranscriptome of plant samples as well and i've been referring to this amazing work for as a guidance for my bioinformatic analysis. Im very new to all bi…
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I am using prokka (an amazing program, BTW) to annotate bacterial genomes for submission to NCBI. Today, I uploaded the sqn files for 23 genomes, and the all failed. Looking at the error messages pr…
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I am wondering if i can use the pipeline to detect bacterial infections in human illumina paired ended fastq files.
I assume i would use already host removed files and use these against ncbi bacteria…
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Hello Team Centrifuge,
I was trying to build my bacterial database using centrifuge, it took almost 60+ hours but still the build status is running..!! Any idea about when it will complete and usua…
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requested by CDPH
-- set as optional