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We are preparing to submit a set of homology annotations created by the Phenoscape project (it may be useful to have a github label for external submissions or similar?)
The phenoscape associations h…
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The following prefixes show up in various places in UBERON but they are not in the Bioregistry, based on the OQUAT analysis in https://biopragmatics.github.io/oquat/unknowns/source/uberon and https://…
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Currently we have two main portals for CL:
* A public-facing page (targeted to ontology reusers, e.g. CELLXGENE, HubMap, Bgee) : https://cell-ontology.github.io/index.html
* A documentation port…
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_WARN org.bgee.pipeline.annotations.SimilarityAnnotation_
- 'warning' messages report Uberon ID and Taxon ID: could you please add the ID name for both?
@fbastian
@vrechdelaval
- 'warning' m…
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Implement an automatic verification of all links provided in the download files (we had problems of outdated URLs, or of missing files, that we only discovered after the files were released).
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(Originally posted by @wirawara):
The download part of package should be re-written in S4 system.
(Added by me):
Is this necessary? Why would it be better (apart from more elegant code)?
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# Context
See [**cell-sci-data-wrangling**](https://czi-sci.slack.com/archives/C024HCSH9PT/p1714423152483169).
# References
* [International Mouse Strain Resource (IMSR)](https://findmice.or…
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Implement developmental filter and grouping, related to https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/chanzuckerberg/single-cell-curation/198
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In GitLab by @fbastian on Jul 16, 2015, 15:18
For generation of multi-species download files:
There will be cases where a homology group include several organs existing in a same species: for exa…
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One user posted the following at Gibberlings3:
"On 2.6, familiar HP seems to be buggy. Hit points are correct for levels one and two for tested familiars (the Chaotic cast; cat, faerie dragon and …