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### Feature Description
Related to #21
For basically every image (in the base reader) we pre-create a 5D dask array containing the entire image. This can be painfully slow for very large images.…
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I'm trying to align 8 vertebrate genomes with progressiveCactus, but I've encountered an error that seems to be related to kyoto tycoon (see log file below). From what I can see from the comments in s…
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### Describe the Bug
When trying to print/display a `BioImage` when passing a custom reader, there is no `_plugin` attribute set:
`AttributeError: 'BioImage' object has no attribute '_plugin…
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# Issue
The `requirements.txt` and `pdm.lock` files have not been updated in 5 months, but the `pyproject.toml` has had some revisions. The `requirements.txt` and `pdm.lock` files need to be kept up-…
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### Describe the Bug
bioio-tifffile.Reader does not properly parse ome-tiff metadata, but bioio-ome-tiff does. There is not notice given to the user which reader is being used, and given bi…
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Hey! This time a question, not a bug!
I am curious how you are counting the commit information? Do you clone the repo and run a set of local git commands to collect everything?
My question here …
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I opened a PR and hoped that even though I don't have permissions to download the test data, maybe the CI job would be able to run the tests for me. Instead, the [github action](https://github.com/bio…
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Hi,
I used cactus to alignment plant genomes (cactus --nodeTypes c4.8xlarge:0.7,r3.8xlarge --minNodes 0,0 --maxNodes 10,5 --provisioner aws --batchSystem mesos --metrics aws:us-east-1:agis-2021-jobs…
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### Describe the Bug
generated docs are getting wrong version number
### Expected Behavior
generated docs are getting right version number
### Reproduction
https://bioio-devs.github.i…
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Hi Mark,
I got this error:
`Not enough memory! User limited to 429496729600 bytes but we only have 269441224704 bytes.`
I tried to restart the job by setting less memory `--defaultMemory`, bu…