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Hello,
I tried to run nasp but after i gave all asked informations nasp just print "total_mem = 62"
It seems something is not working at the beginning of the pipeline and it ends in several secon…
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Hi Torsten,
I have tried to add the brucella 21 MLST to your script using the instructions provided in the readme document. I downloaded the 21 locus txt file from pubMLST and the associated seque…
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asthma (MONDO_0004979) has the axiom:
'disease has feature' some Anxiety
'disease has feature' some 'Recurrent respiratory infections'
I'm not sure these are correct. The text def says: The sympt…
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- our model disease target is Brucellosis caused by a bacterium called (Brucella) that infects cows, sheep, goats, camels, and human.
- we are interested in
- Brucella melitensis,
- B. abortus
…
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In the genomes list for Brucella inopinata BO1, it has 55 contigs listed in the table, but when you highlight that row, in the information panel it says there are 48 sequences:
Then when I go to …
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```
Anvi'o version ...............................: 3-master
Profile DB version ...........................: 23
Contigs DB version ...........................: 10
Pan DB version ..................…
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Quand dans 'handle panel" on clique sur "Generate Geno Number", en apparence rien ne se passe, et on ne peut retourner à la base via le bouton back. Il semble nécessaire de clore la base et de la réou…
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minor:
-in import file, allow "Key" as well as "key"
-in mlva data import, convert question marks "?" as well as "-1" in absence of value
-while importing, field names which are numbers are listed …
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I tried using the output of `metagenome.py kraken` for `metagenome.py krona` directy but it looks wrong:
`metagenomics.py krona kraken_out.txt /krona/taxonomy krona_out.html`