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tseemann
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mlst
:id: Scan contig files against PubMLST typing schemes
GNU General Public License v2.0
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'Latest' Docker container
#138
try8-cdc
opened
2 weeks ago
0
alternative name of this tool for bio.tools repo
#137
mthang
opened
4 months ago
0
Serratia MLST Schemes
#136
erinyoung
opened
5 months ago
0
ST not given for cgMLST
#135
mishmoods
opened
9 months ago
1
ST not given even though for all loci an exact allele match is found
#134
NimroddeWit
closed
9 months ago
1
DB download fails with "ERROR: Download didn't fully complete!"
#133
marrip
opened
11 months ago
1
Perl issue: uninitialized value
#132
ngraned
closed
11 months ago
0
Perl issue in linux
#131
gizzlev
opened
1 year ago
0
If the mlst can output clonal complexes ?
#130
ybdong919
opened
1 year ago
1
Get sequence of each from mlst commend line
#129
YaoXinZhi
opened
1 year ago
0
Reported schema not found in scheme_species_map.tab
#128
miguelpmachado
opened
1 year ago
2
IUPAC codes
#127
MJMCarvalho
opened
1 year ago
0
Resolves #125
#126
stroehleina
closed
1 year ago
1
Incorrect output for schemes with number of alleles < 7 when no hits are found by blastn
#125
stroehleina
closed
1 year ago
1
More info for typing results?
#124
domenico-simone
opened
1 year ago
0
Update Species scheme map
#123
joergFLI
opened
2 years ago
0
ST not identified
#122
ireneortega
opened
2 years ago
0
Fungal genomes not working
#121
14corman
opened
2 years ago
1
create v2.21.0 release?
#120
kapsakcj
closed
2 years ago
1
modify - mlst-download_pub_mlst
#119
mellowo
closed
2 years ago
0
yersinia McNally scheme missing in updated pubmlst database
#118
bala-ruokavirasto
opened
2 years ago
0
How can i get the number of miss matches?
#117
mellowo
opened
2 years ago
1
XS.c: loadable library and perl binaries are mismatched (got handshake key 0xfa80080, needed 0xf880080)
#116
peflanag
opened
2 years ago
2
Odd delays when running MLST on a slurm compute node.
#115
HBrendy
closed
2 years ago
1
How to deal with changes of MLST scheme names in PubMLST?
#114
bioprojects
opened
2 years ago
0
Is this in silico MLST?
#113
EsamAlmuhaideb
closed
2 years ago
1
Failed to install latest version (v2.19.0) through conda
#112
llk578496
closed
2 years ago
3
What is sequence type?
#111
grendon
opened
2 years ago
0
blastn usage reporting
#110
mcroxen
closed
2 years ago
2
command error
#109
YuWang07
opened
2 years ago
0
novel alleles already exist in pubMLST db
#108
kiepczi
closed
2 years ago
0
Problem updating mlst databases
#107
eduardopdev
opened
2 years ago
1
cgMLST database creation documentation
#106
lskatz
opened
2 years ago
2
Each scheme needs a genotype
#105
lskatz
opened
2 years ago
0
Error while DB update
#104
ajkarloss
closed
2 years ago
2
No read out for 1 gene of the MLST scheme
#103
mdiricks
opened
3 years ago
0
Title fight: mlst vs cge
#102
jdalsdurf
opened
3 years ago
2
Invalid --schemes
#101
nwalas
opened
3 years ago
1
Does mlst have an issue with allele sequence headers contain periods? Confirmed.
#100
slvrshot
closed
3 years ago
1
SNP calling
#99
peflanag
closed
2 years ago
3
dbases.xml updated suffix
#98
indexofire
opened
3 years ago
7
Does not detect allele if it´s present in reverse orientation? False
#97
mdiricks
closed
4 years ago
4
Multiple but same allele assigned
#96
ramay
closed
4 years ago
2
Add option to report all matched schemes
#95
hmontenegro
opened
4 years ago
2
MLST vs kraken identification conflict
#94
rajaldebnath
closed
4 years ago
6
Extract MLST sequences for trees
#93
TseWue
opened
4 years ago
5
MLST output visualization
#92
mabouelk
opened
4 years ago
1
tseemann / mlst
#91
raomohan89
closed
4 years ago
1
expanding --novel output to include matching alleles?
#90
jdalsdurf
opened
4 years ago
2
XS error
#89
mredrejo
closed
4 years ago
1
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