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Hi there. Great tool. However it's not compatible with Evernote Web Clipper. Perhaps because of how it modifies the URL of the doc to be displayed. Any way of fixing this? Cheers.
The main reason I l…
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Is Clipper running under PHP 7.2?
I do not want to switch to another system yet.
Is there maybe an update?
or just security updates?
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Here's the stack trace:
```
(clipper)[mason@ip-172-31-41-168 clipper]$ clipper -b haloclip_prokspen.chr1.hg19.star.bam -o haloclip_prokspen.chr1.hg19.clipper.bed -s hg19
Traceback (most recent call l…
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Could a saturation module be added? Something like a zener limiter with controllable current (controls rolloff) would be nice. Sorry if it’s already there and I missed it.
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I have been trying to use clipper with a custom annotation (hg38 plus additional over expressed genes) but I am unable to get it to work. In the wiki it mentions that when not using a model organism y…
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Hi,
clipper v 1.0 with all defaults crashes with "KeyError: 'padj'"
```
clipper -b ~/src/clipper/clipper/test/data/indexed_test.bam -s hg19 -v --debug
```
It seems column 'padj' is only ever creat…
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When running CLIPper I was getting a couple of deprecation warnings which I have pasted below. I emailed Michael regarding this and found out that these are just benign warnings which will not affect …
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CoverageBed counts more reads overlapping with peaks than the number of peaks overlapping reported by clippers internal count.
I'll Investigate this
@mlovci is there something with the read counting …
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```
Matplotlib is building the font cache; this may take a moment.
Traceback (most recent call last):
File "/opt/anaconda3/bin/clipper", line 5, in
from clipper.src.main import call_main
…
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Hi, I am trying to build the sample from the docs, the clipper library
I got something working, I can't get past this error.
thanks for the help
`INFO [ritual::processor] Running processing step…