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Nested in #46
I thought I would create a thread for the Plant Att import as it has been committed for quite a while now and it has gone silent. As I mentioned it has been committed for quite a whil…
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Files without metadata (these files are present in Sharepoint, but we don't have metadata for them, so they are not indexed by coveo):
- [x] /sites/default/files/en/assets/brochures/bpd/clonepix-2.pd…
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Hello, thank you for the wonderful tools for cancer genomic analysis !!
I am curious that if the purple failed to select the optimal solution for purity/ploidy, then how do I deal with already puri…
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Hi
I am wondering what is the best way to visualize the clones in a tree in order to accurately assess of the evolution or monoclonal or polyclonal.
I tried to check the stories Rdata and checked…
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Hi, I am trying to apply sciclone to targeted NGS panel data, but seems to be difficult and unreliable. Do you have any insights and suggestions? Thank you!!
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Hi again, I am running the pipeline again but this time I am encountering the error as stated in the title. The logs are below
This is my slurm logs
````executor > local (44)
[- ] proce…
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- Optional flag for aligned reads before / after deduplication
- Also allow for calculation of post deduplicat endogenous
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Hello again, now the pipeline is getting this error:
```
executor > local (821)
[- ] process > merge_fastq -
[44/a23509] process > RegionsBedToIntervalList (R... [100%…
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Hi, Fran.
After preprocessing the 10X scATAC-seq data from CRC or polyps using cellranger-atac, I run SComatic for calling mutation following the your example. Detailly, I replaced the paremeters …
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