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## Expected Behavior
cwltool --pack https://raw.githubusercontent.com/common-workflow-language/cwl-v1.1/main/tests/conflict-wf.cwl should resolve conflicts and output an equivalent workflow to cwlpac…
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> 195 tests passed, 2 failures, 0 unsupported features
- [ ] add `./run_test.sh RUNNER=cwltool EXTRA="--provenance $PWD/RO_test"` to ci.commonwl.org
or maybe `seq 1 133 | parallel ./run_test.sh RU…
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https://github.com/common-workflow-language/gxargparse
https://github.com/common-workflow-language/cwltool
http://www.commonwl.org/v1.0
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```
docker exec -it favlib cwltool --outdir=/jupyter/output/workflow/main-workflow-aynec.cwl workflow/workflow-aynec.yml
/usr/bin/cwltool 1.0.20180302231433
Resolved 'workflow/workflow-aynec.…
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## Expected Behavior
Like for `WorkflowStep.in[].valueFrom`, CWL parameter references and CWL expressions at the level of a WorkflowStep should have visibility to the `WorkflowStep` inputs.
## Act…
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```
File "/build/toil-5.5.0/src/toil/cwl/__init__.py", line 16, in
from toil.version import cwltool_version
ImportError: cannot import name 'cwltool_version' from 'toil.version' (/build/toil-5.…
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Using https://github.com/kislyuk/argcomplete
Here is how `cwltool` did it: https://github.com/common-workflow-language/cwltool/pull/1362/files
┆Issue is synchronized with this [Jira Story](https:…
mr-c updated
10 months ago
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Hello,
I having the weaver in ems configurated and running using docker compose.
When I triying execute some job, for this case "file2string_array", catch the next error:
'/opt/local/src/weav…
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## Expected Behavior
File `path`s should be recognized without URI escaping (Except whatever is needed by YAML) even if they contain URI-unfriendly characters like `#` or ` `; e.g. `colo-829_1#…
stain updated
5 years ago
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Fork Rabix Composer.
Make it run Coil (our CWLTool) instead of Rabix's CWLTool.
Create a setting to specify which CWL engine to run.