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![image](https://github.com/sbslee/pypgx/assets/9035751/6fbabd8a-e144-4b3f-a2f0-3ddaace9c81b)
I have more than 100 samples.
When I use the VCFs (generated by Dragen/Illumina) as input it gives sim…
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As promised, I am showing here what I recently meant regarding the errors in the Wikipedias. And a few other things. It's not a big game changer, but it can be annoying sometimes. :/
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Ope30 updated
4 years ago
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Hello there,
while testing StellarPGx v1.2.5 on CYP2D6-calling on samples from [GeT-RM](https://www.ebi.ac.uk/ena/browser/view/PRJEB19931) I encountered something unexpected. On your [publication](…
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**Description**
I am looking into the ADMET group in single instance prediction. For some of the datasets, a small subset of molecules appear both in the `train_val` and `test` datasets.
**To Repr…
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Thank you for providing an example to find sequence_locations such as dbSNP IDs for a given gene and allele at https://github.com/cpicpgx/cpic-data/wiki#allele (e.g. CYP2D6*3).
In practice, users w…
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Hi,
I am using Aldy v4.5 (Python 3.7.1 on Linux) to genotype Oxford Nanopore WGS data in phased BAM files. First I created a profile using one of my long read bam files without any CNVs or SVs in m…
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Out team would like to embed StellarPGx within an existing nextflow pipeline that includes additional tools to genotype CYP2D6.
This is not possible with the original nextflow syntax, which StellarP…
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Initial thoughts and proposals outline below, based on info collected in the requirements doc [here](https://docs.google.com/document/d/1J4AqGDEqyK8KAzfiowgHYKJNvzHuwHSHgkN9dleLemY/edit#heading=h.b3a9…
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Dear StellarPGx,
I'm applying your pipeline for using in pharmcat and I got this error message. im running it through our cluster. Please advise how I can fix this problem.
this is the command
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There is this very well structured code for ADME prediction: https://github.com/swansonk14/admet_ai
We should have this model in the hub. It seems be straightforward according to the README file, bu…