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I saw your article about using genetic algorithms for scheduling a couple of weeks ago and it piqued my interest in genetic algorithms, in general. I've been looking at some genetic algorithm framewor…
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Not sure if this is already supported and I'm just running into some kind of problem or if this is yet to be implemented. That said, I would really like to be able to store string and byte arrays. Thi…
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I can't remember what happened but we've ended up with some tracks that do the "transcription" both ways, DNA to RNA and also RNA to DNA. Since, biologically speaking, it only goes from DNA to RNA, we…
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**CrateDB version**: 2.1.5
**JVM version**: OpenJDK 1.8.0_151
**OS version / environment description**: Ubuntu / AWS / Local SSD Raid-0
**Problem description**:
Indexes end up using almo…
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This is likely intentional but we should still show these parameters in the #docs.
Test command:
```
WMCF9-CB5:hellbender-protected shlee$ ./gatk-launch Mutect2 -I ~/Documents/workshop_materials…
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Hi
What would be the best way to output active regions from GATK4 HaplotypeCaller?
In GATK 3.x, an option `--activeRegionOut ` could be used to write active regions in a TSV file. However, I am …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/rcastelo/GenomicScores
Confirm the following by e…
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`numpy.sum` (I'm using version 1.10.2) is throwing a `TypeError` exception on at least the object returned by `GenotypeChunkedArray.to_nref()`. Looks to me like the bug is that the `out` kwarg isn't …
travc updated
8 years ago
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Hi Alistair,
From Python 3, I'm using pysamstats 0.24.1 and pysam 0.8.4 installed with pip3.
In case a string is given to the option "chrom", the "load_variation" function raises:
"TypeError: decodi…
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I'd like to share and discuss ideas about DNA or RNA sequences, partially mentioned in #55.
Currently, only five nucleotides (A/C/G/T/N) are defined in this package and a DNA sequence cannot store ot…