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![image](https://cloud.githubusercontent.com/assets/449558/24775834/72fa00fc-1aec-11e7-81cd-6c60eb9a294a.png)
I'm trying to do a dendrogram:
> ValueError: Linkage 'Z' uses the same cluster more th…
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Refer to https://github.com/opensearch-project/ml-commons/pull/355#discussion_r911563139
Seems current RCF summarizer can't export nearest centroids for all data points. That means client side need…
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Hello,
When saving the heatmap to pdf/png files, the plots show vertical white lines, more in png files.
Input is a large matrix, 113 genes by 10154 cells.
Here is the codes for a pdf file, `…
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Good morning,
Many thanks for developing this amazing tool.
I have a doubt about the pairwise mode that may seem naive, but I could not figure out.
I notice in some of my dataset and also here …
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This repo is based on [this tweet](https://twitter.com/alexpghayes/status/1149874168709541888?s=21) by @alexpghayes.
For the past few months I have been off an on working on a SBM package in R int…
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This is one of the few things I still load up R to plot.
![](http://i.stack.imgur.com/m25OG.png)
I think there are two parts to implement this: `Stat.heatmap` that computes pairwise distances and op…
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**Describe bug**
when running a dendogram, certain sub-sets of the data produce graphs in which nodes are shaded by cluster but are scattered amongst each other rather than organized by cluster. I h…
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I'm doing an agglomerative hierarchical clustering ([AHC][1]) experiment using the [fastcluster][2] package in connection with `scipy.cluster.hierarchy` module functions, in `Python 3`, and I found a …
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Two questions RE: DoHeatmap
1. Is there a straight-forward way to re-order the cells by their level of feature expression (e.g. re-order the plot below by decreasing GFAP expression left-to-right? …
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Is there a way to extract the p-values from the 'testClusters' function? The output is currently a list with 2 elements but none of them contain statistical significance results. One element of the li…