issues
search
igrabski
/
sc-SHC
Significance analysis for clustering single-cell RNA-sequencing data
100
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
how to test my NMF cluster
#29
Phoenix12580
closed
4 days ago
4
error in intI(j, n = x@Dim[2], dn[[2]], give.dn = FALSE) : 'NA' indices are not (yet?) supported for sparse Matrices In addition: Warning message: In scSHC(counts, batch = scedata$orig.ident, cores = 15) : Converting batch vector to character
#28
xing9133
opened
1 week ago
1
Error in mclapply(1:10, function(i) { : 'mc.cores' > 1 is not supported on Windows
#27
theaaeh
opened
1 month ago
1
Error: TridiagEigen: eigen decomposition failed
#26
kloot
closed
1 month ago
4
`scSHC` error: `Error in fitdistr(Qclusts2, "normal") : 'x' must be a non-empty numeric vector`
#25
mschilli87
opened
2 months ago
24
testClusters function ends abruptly and gives a single cluster assignment to all cells
#24
amruta2612
closed
4 months ago
7
Error running scSHC even with matrix dimension >3
#23
sg3451
closed
5 months ago
7
Cannot extract p-values from cluster comparisons
#22
sg3451
closed
5 months ago
4
`SCE`ing around
#21
federicomarini
closed
10 months ago
0
Discrepancy SHC and testClusters
#20
browaeysrobin
closed
11 months ago
2
Code scRNA-seq gating plots
#19
browaeysrobin
closed
11 months ago
2
Clarification on "Single-Cell Significance of Hierarchical Clustering" Step in sc-SHC
#18
lisch7
closed
11 months ago
1
ATACseq support
#17
gszeto0
closed
1 year ago
1
Cluster Number is Very Large
#16
DarioS
closed
1 year ago
5
Finding scSHC optimal resolution?
#15
richardmustaklem
closed
1 year ago
2
'mc.cores' > 1 is not supported on Windows
#14
Prooomise
closed
1 year ago
3
interpretation of the significance results
#13
whiteorchid
closed
1 year ago
1
Type of count data
#12
cutleraging
closed
1 year ago
3
Node not found
#11
ryf0810
closed
1 year ago
2
Underclustering with batch correction
#10
scharch
closed
1 year ago
3
scSHC() and testClusters with PCs as input instead of gene expression
#9
Dario-Rocha
closed
1 year ago
1
Compatibility with spatially-aware clustering algorithms for spatial RNAseq?
#8
berniejmulvey
closed
1 year ago
1
Replace mclapply with OS-agnostic alternatives
#7
ATpoint
opened
1 year ago
5
scSHC gives different errors with and without batch. Example data runs fine
#6
mcsimenc
closed
1 year ago
5
High memory usage
#5
mihem
closed
1 year ago
1
Visualising data + accessing p-values
#4
ShakedLab
closed
1 year ago
3
Compatibility with integration methods
#3
lucia-ramirez
closed
1 year ago
1
Error in eigs_real_sym; k must satisfy 0 < k < rnow(A)
#2
VitorAguiar
closed
1 year ago
8
scSHC function Error
#1
cutleraging
closed
2 years ago
0