igrabski sc-SHC issues - Githubissues

igrabski / sc-SHC

Significance analysis for clustering single-cell RNA-sequencing data

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testClusters function ends abruptly and gives a single cluster assignment to all cells

#24 amruta2612 closed 5 days ago
7
Error running scSHC even with matrix dimension >3

#23 sg3451 closed 4 weeks ago
7
Cannot extract p-values from cluster comparisons

#22 sg3451 closed 1 month ago
4
`SCE`ing around

#21 federicomarini closed 5 months ago
0
Discrepancy SHC and testClusters

#20 browaeysrobin closed 7 months ago
2
Code scRNA-seq gating plots

#19 browaeysrobin closed 7 months ago
2
Clarification on "Single-Cell Significance of Hierarchical Clustering" Step in sc-SHC

#18 lisch7 closed 7 months ago
1
ATACseq support

#17 gszeto0 closed 9 months ago
1
Cluster Number is Very Large

#16 DarioS closed 9 months ago
5
Finding scSHC optimal resolution?

#15 richardmustaklem closed 10 months ago
2
'mc.cores' > 1 is not supported on Windows

#14 Prooomise closed 10 months ago
3
interpretation of the significance results

#13 whiteorchid closed 11 months ago
1
Type of count data

#12 cutleraging closed 11 months ago
3
Node not found

#11 ryf0810 closed 11 months ago
2
Underclustering with batch correction

#10 scharch closed 9 months ago
3
scSHC() and testClusters with PCs as input instead of gene expression

#9 Dario-Rocha closed 11 months ago
1
Compatibility with spatially-aware clustering algorithms for spatial RNAseq?

#8 berniejmulvey closed 11 months ago
1
Replace mclapply with OS-agnostic alternatives

#7 ATpoint opened 11 months ago
5
scSHC gives different errors with and without batch. Example data runs fine

#6 mcsimenc closed 12 months ago
5
High memory usage

#5 mihem closed 12 months ago
1
Visualising data + accessing p-values

#4 ShakedLab closed 12 months ago
3
Compatibility with integration methods

#3 lucia-ramirez closed 1 year ago
1
Error in eigs_real_sym; k must satisfy 0 < k < rnow(A)

#2 VitorAguiar closed 12 months ago
8
scSHC function Error

#1 cutleraging closed 1 year ago
0