asntech intervene issues

asntech / intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

http://intervene.rtfd.io/

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issues

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Is there option to calculate intersections not in number of intervals but in positions (nucleotides)?

#65 mkazanov opened 2 days ago
0
label size modification

#64 asylvz closed 1 month ago
2
--bedtools-options not available anymore?

#63 sathvik-samaga closed 1 month ago
2
Disagreement between Intervene and BEDtools

#62 lovelycatZ opened 1 month ago
4
Plotting crashed for small matrix with 0 and 1

#61 ievarau opened 5 months ago
1
Python 3.10 compatibility issues

#60 wazimismail opened 8 months ago
3
Differences between bedtools command line vs intervene pairwise?

#59 unique379r opened 9 months ago
2
Error in pairwise module

#58 unique379r closed 9 months ago
9
Memory exhausted - too many files

#57 alistairhockey opened 10 months ago
2
intervene pairwise: ValueError: keyword grid_b is not recognized;

#56 Edert closed 8 months ago
1
--save-overlaps is not working

#55 biokritsini closed 1 year ago
1
Support *.bedpe format

#54 wbszhu opened 1 year ago
0
The intervene venn diagram is misleading

#53 danli349 closed 1 year ago
3
Intervene Docker

#52 asntech opened 1 year ago
3
ipython-notebook not installing in conda

#51 Folu0909 closed 1 year ago
4
Unable to install using conda

#50 kyleLesack closed 1 year ago
5
Intervene venn –save-overlaps not working

#49 jharrison0123 closed 2 years ago
5
upsetr script not plotting

#48 nouratb closed 11 months ago
2
Bedtools-options does not produce different results

#47 MikeWLloyd closed 2 years ago
1
total number diff in venn plot

#46 whiteorchid closed 1 year ago
2
error when attempting to use pairwise

#45 dllahr closed 9 months ago
5
search not working in readthedocs

#44 dllahr opened 3 years ago
1
conda install not working with existing environment python=3.7

#43 dllahr closed 11 months ago
1
--bedtools-options doesn't work

#42 adrisede closed 3 years ago
0
Help running intervene?

#41 jsanmig closed 3 years ago
2
pairwise is not working even on --test

#40 unique379 closed 11 months ago
10
fail to use pairwise comands

#39 unique379 opened 3 years ago
2
Error using upset due to old version of UpSetR module in conda installation

#38 nkschaefer closed 3 years ago
1
After upgrade to pandas 1.0.0, DataFrame.ix is removed

#37 yulijia closed 3 years ago
4
AdobePiStd when loading UpSet PDFs in Illustrator

#36 ilibarra closed 3 years ago
1
Questions: Why half of pairwise is not a exact mirror of the other half? And about negative values..

#35 Rseq opened 3 years ago
7
Unexpected (wrong?) results in terms of total length for the intersection of two sets

#34 amizeranschi closed 11 months ago
7
update intervene's bedtools

#33 mortunco closed 3 years ago
2
intervene venn with lists does not work

#32 ashleymaeconard closed 4 years ago
4
I am wondering whether I can use the fisher test in pairwise module about my species(Arabidopsis thaliana)

#31 shangguandong1996 opened 4 years ago
0
Error running intervene upset method

#30 camilogarciabotero closed 3 years ago
2
small but confused bug for reading error

#29 clouds-drift closed 3 years ago
2
intervene venn doesn't work with "--bedtools-option s=True"

#28 kerenzhou062 opened 4 years ago
2
intersect result is wrong compare to bedtools intersect

#27 StayHungryStayFool closed 11 months ago
11
Revert "Revert "Fix pairwise dendrogram plots for new seaborn""

#26 asntech closed 8 months ago
0
Revert "Fix pairwise dendrogram plots for new seaborn"

#25 asntech closed 4 years ago
0
Feature request to add an option to label the output file

#24 vschulz closed 4 years ago
1
suggestion on color options

#23 mortunco opened 5 years ago
0
how to order the files in pairwise heatmap

#22 clouds-drift closed 3 years ago
0
Letting the User choose the "degree" of intersect [enhancement]

#21 LucaTucciarone opened 5 years ago
0
ImportError: cannot import name 'get_backend'

#20 dpolychr closed 4 years ago
2
Bedtools intersect error

#19 jaqx008 closed 5 years ago
1
upset R package compatibility

#18 chrisamiller opened 5 years ago
3
Is there anyway to set the value range in "heatmap" and "pieplot"?

#17 clouds-drift opened 5 years ago
1
how to display the "--reldist" result?

#16 clouds-drift closed 1 year ago
1